Shimwellia blattae: EBL_c38020
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Entry
EBL_c38020 CDS
T02111
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ebt
Shimwellia blattae
Pathway
ebt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EBL_c38020 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebt03021
]
EBL_c38020 (rho)
03019 Messenger RNA biogenesis [BR:
ebt03019
]
EBL_c38020 (rho)
Transcription machinery [BR:
ebt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EBL_c38020 (rho)
Messenger RNA biogenesis [BR:
ebt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EBL_c38020 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AFJ48837
UniProt:
I2BE83
LinkDB
All DBs
Position
complement(3934731..3935990)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaacctggcccgtatgcgcaagcaagacatcatcttcgcgatcctcaag
cagcacgcgaagagcggcgaagatattttcggcgacggtgtgctggagatattgcaggat
ggattcggattcctccgctctgcagacagctcctaccttgccggtcctgatgatatctac
gtttctcccagccaaatccgccgtttcaacctccgcactggtgacaccatttccgggaaa
atccgtccgccgaaagaaggcgagcgctattttgccctgttaaaagttaacgaagttaac
tacgacaaaccggaaaacgcccgcagtaaaattctgtttgaaaacttaaccccgctgcac
gcgaactcccgtttgcgtatggagcgcggtaacggttcaaccgaagacttaaccgcccgt
gttctggatctggcatccccgattggccgcggccagcgtggcctgatcgtggcaccgccg
aaagccggtaaaaccatgctgctgcagaacatcgcccagagcattgcctacaatcacccg
gattgtgtgctgatggtgctgctgattgacgaacgtccggaagaagttaccgagatgcag
cgtctggtcaaaggcgaagtggttgcctctacctttgatgaacctgcctcccgccacgtg
caggttgctgaaatggtgattgaaaaagccaagcgcctggttgagcacaaaaaagacgtt
attatcctgctcgactccatcacccgtctggcccgtgcctataacaccgtggtgccggct
tccggtaaagtgctgaccggtggtgtggacgccaacgccctgcatcgcccgaaacgcttc
ttcggtgcggcccgtaacgtggaagagggcggcagcctgaccattatcgcgaccgcgctg
attgataccggttcgaagatggacgaagtgatttacgaagagtttaaaggcaccggtaac
atggaactgcatctctctcgtaaaattgctgaaaaacgcgtcttcccggctatcgactac
aaccgttccggtacccgtaaagaagagctgctcactactcaggaagaactgcagaaaatg
tggatcctgcgcaagattattcacccgatgggggagatcgacgcgatggaattcctgatt
aataaactggcaatgacgaaaacaaacgacgaatttttcgacatgatgaaacgttcgtaa
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