Equus caballus (horse): 100071059
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Entry
100071059 CDS
T01058
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
3.6.4.13
5.6.2.3
]
Organism
ecb
Equus caballus (horse)
Pathway
ecb03013
Nucleocytoplasmic transport
ecb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100071059 (UPF1)
03015 mRNA surveillance pathway
100071059 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100071059 (UPF1)
Enzymes [BR:
ecb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100071059 (UPF1)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100071059 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100071059 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100071059
NCBI-ProteinID:
XP_023481292
Ensembl:
ENSECAG00000010639
VGNC:
24804
LinkDB
All DBs
Position
21:4025699..4059154
Genome browser
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGGPV
GVGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcgcagacgctcacctttctggacaccgaggag
gccgagctgctcggcgctgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagacaccccccggcggccccggcggcggcggcgcggggggcccggtc
ggcgtgggcgcgggcgccgcggccggacagctcgacgcgcaggttggtggacccgagggc
atcctgcagaatggggctgtggatgacagcgttgccaagactagccagttgttggccgag
ttgaacttcgaagaagatgaagaagatacgtattacacaaaggatctccccgtacatgcc
tgcagttactgtggaatacacgatcctgcttgcgtggtttactgtaataccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcacctcgtgagg
gcaaagtgcaaagaggtgactctgcacaaggatgggccgctgggggagacagtcctggag
tgttacaactgtggctgccgcaacgtcttcctccttggcttcatccccgccaaggccgac
tccgtggtggtgctgctgtgcaggcagccctgtgccagccaaagcagccttaaggacatc
aactgggacagctcgcagtggcagcccctgatccaggaccgctgcttcctgtcttggctg
gtcaagatcccttctgagcaggagcagctgcgggctcggcagatcactgcccagcagatc
aacaagctggaggagctctggaaggaaaatccttccgccaccttagaggacttggagaag
ccaggggtggacgaggagccgcagcacgtcctcctgcggtacgaggacgcctaccagtac
cagaacatctttggccctctggtcaagctggaggctgactatgacaagaaactgaaagag
tcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcagggggatgagatatgcctgcggtacaaaggggacctggcg
cccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggcgatgagatt
gccattgagctgcggagcagtgtgggtgcacccgtggaggtgactcataacttccaggtg
gatttcgtgtggaagtcaacctcgtttgacaggatgcaaagtgcattgaaaacctttgct
gtggacgagacgtccgtgtcaggctacatctaccacaaactgctcggccatgaggtggag
gatgtgatcatcaaatgccagctgccaaagcgcttcacggcacaggggctccctgacctt
aaccactcgcaggtttacgctgtaaagactgtgctgcagaggccgctgagcctgatccag
ggaccacctggcacggggaagactgtgacctcggccaccatcgtctatcaccttgctcga
caaggcaacgggcctgtgctcgtctgtgctccgagtaacatagccgtggatcagctgacc
gagaagatccatcagactgggctgaaagtcgtgcggctgtgtgccaagagccgtgaggct
atcgactccccggtgtcgttcctcgccctgcacaaccagatcaggaacatggatagcatg
ccggagctccagaagctgcagcagctgaaggatgagactggggagctgtcgtctgcagac
gagaagcggtaccgggccctgaagcgcactgccgagagggagctgcttatgaacgcagat
gtcatctgctgcacgtgtgtgggtgcaggcgacccgaggcttgccaagatgcagttccgg
tccattttaatcgatgaaagcacccaggccaccgaaccagagtgcatggtccctgtggtc
ctcggagccaagcagctgatccttgtgggcgaccactgccagctgggccctgttgtgatg
tgcaagaaggccgccaaggccgggttgtcccagtcgctcttcgaacgcctggtggtgctg
ggcatccgtcccatccgcctccaggtccagtatcggatgcaccctgcgctcagtgccttc
ccgtccaacatcttctacgagggctctcttcagaacggcgtcactgcagcggaccgtgtg
aagaaggggtttgacttccagtggccccaacctgataagccaatgttcttctacgtgacc
cagggccaggaggagatcgccagctcgggcacctcctacctgaacaggacggaagccgca
aatgtggagaagatcaccacaaagctgctgaaggcaggtgccaagccggaccagatcggc
atcatcacgccctacgagggccagcgctcctacctggtgcagtacatgcagttcagcggc
tccctgcacaccaagctctatcaggaggtggagatcgccagtgtggatgcattccagggg
cgcgagaaggacttcatcatcctctcctgtgtgcgcgccaacgaacaccaaggcatcggc
tttttaaacgaccccaggcgacttaacgtggccctgaccagagcgcgatacggggtcatt
attgtgggcaacccaaaggccctgtccaagcagccgctctggaaccacctgctgaactac
tacaaggagcagaaagtgctggtggaagggcccctgaacaacctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgctttatgacg
acagccatgtatgatgcccgggaggcaattatcccaggatcggtctatgaccggagcagc
cagggccggccctcaaacatgtacttccagacccacgaccagattggcatgatcagtgcc
ggccccagccatgtggccgccatgaacattcccatccctttcaacctggtcatgccaccc
atgccacccccggggtatttcggacaagctaacgggccagccgcaggccggggcaccccg
aaaggcaagactggccgtggggggcgccagaagaaccgctttgggctccctggacccagc
cagacgactctccccaacagccaggccagccaggatgtggcatcgcagcccttctcacag
ggggcactgacccagggctacatctccatgagccagccctcccagatgagccagcccggc
ctctcgcagcccgagctgtcccaggacagttaccttggtgatgagtttaagtcacagatc
gatgtggcgctgtcacaagactccacgtaccagggggagcgggcgtaccagcacggtgga
gtgacggggctgtcccagtactag
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integrated database retrieval system
