Escherichia coli O6 K2 H1 CFT073 (UPEC): c5396
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Entry
c5396 CDS
T00106
Symbol
fimD
Name
(GenBank) Outer membrane usher protein fimD precursor
KO
K07347
outer membrane usher protein
Organism
ecc
Escherichia coli O6:K2:H1 CFT073 (UPEC)
Pathway
ecc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ecc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
c5396 (fimD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ecc02000
]
c5396 (fimD)
02044 Secretion system [BR:
ecc02044
]
c5396 (fimD)
02035 Bacterial motility proteins [BR:
ecc02035
]
c5396 (fimD)
Transporters [BR:
ecc02000
]
Other transporters
Pores ion channels [TC:
1
]
c5396 (fimD)
Secretion system [BR:
ecc02044
]
Chaperone-usher system
Type 1 pilus assembly protein
c5396 (fimD)
Bacterial motility proteins [BR:
ecc02035
]
Pilus system
Fimbrial proteins
c5396 (fimD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usher
PapC_N
PapC_C
Motif
Other DBs
NCBI-ProteinID:
AAN83818
UniProt:
A0A0H2VFD9
LinkDB
All DBs
Position
5139826..5142462
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AA seq
878 aa
AA seq
DB search
MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQA
VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN
TASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP
GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSK
NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV
IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV
PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY
RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR
YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT
STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNI
PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD
GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL
VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP
TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA
GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatctgaatttaagactttaccagcgaaacacacagtgcttgcatattcgtaag
catcgtttggctggtttttttgtccggctctttgttgcctgtgcttttgccgcacaggca
cctttgtcatctgccgaactctattttaacccgcgttttttagcggatgatccccaggct
gtggctgatttatcgcgttttgagaatgggcaagaattaccgccagggacgtatcgtgtc
gatatctatttgaataatggttatatggcaacgcgtgatgtcacatttaatacgggcgac
agcgaacaagggattgttccctgcctgacacgcgcgcaacttgccagtatggggctgaat
acggcttctgtctccggtatgaatctgctggcggatgatgcctgcgtgccattaacctca
atgatccatgacgctactgcgcatttagatgttggtcagcagcgactcaacctgacgatc
cctcaggcatttatgagtaatcgcgcgcgtggttatattcctcctgagttatgggatccc
ggtattaatgccggattgctcaattataatttcagcggaaatagtgtacagaatcgaatt
gggggtaacagccattatgcatatttaaacctacagagtgggttaaatattggtgcgtgg
cgtttacgcgacaataccacctggagttataacagtagcgacagttcatcaggtagcaaa
aataaatggcagcatatcaatacctggcttgagcgagacataattccgttacgttcccgg
ctgacgttgggtgatggttatactcagggcgatattttcgatggtattaactttcgcggc
gcacaattggcctcagatgacaatatgttacccgatagccaaagaggatttgccccggtg
atccacggtattgctcgtggtactgcacaggtcactattaaacaaaatgggtatgacatt
tataatagtacggtgccaccggggccttttaccatcaacgatatctatgccgcaggtaat
agtggtgacttgcaggtaacgattaaagaggctgacggcagtacgcagatttttaccgta
ccctattcgtcagtcccgcttttgcagcgtgaagggcatacacgttattccattacggca
ggagaataccgtagtggaaatgcgcaacaggaaaaacctcgctttttccagagtacatta
ctccacggccttccggctggctggacaatatatggtggaacgcaactggcggatcgttat
cgtgcttttaatttcggtatcgggaaaaacatgggggcactgggcgctctgtctgtggat
atgacgcaggctaattccacacttcccgatgacagtcagcatgacggacaatcggtgcgt
tttctctataacaaatcgctcaatgagtcaggcacgaatattcagttagtgggttaccgt
tattcgaccagtgggtattttaatttcgctgatacaacatacagtcgaatgaatggctac
aacatcgaaacacaggatggagttattcaggttaagccgaaattcaccgactattacaat
ctcgcttataacaaacgcgggaaattacaactcaccgttactcagcaactcgggcgcaca
tcaacactgtatttgagtggtagccatcaaacttattggggaacgagtaatgtcgatgag
caattccaggctggattaaatactgcgttcgaagatattaactggacgctcagctatagc
ctgacgaaaaacgcctggcaaaaaggacgggatcagatgttagcgcttaacgtcaatatt
cctttcagccactggctgcgttctgacagtaaatctcagtggcgacatgccagtgccagt
tacagcatgtcacacgatctcaacggtcggatgaccaatctggctggtgtatacggtacg
ttgctggaagacaacaacctcagctatagcgtgcaaaccggctatgccgggggaggcgat
ggtaatagcggaagtacaggctacgccacgctgaattatcgcggtggttacggcaatgcc
aatatcggttacagccatagcgatgatattaagcagctctattacggagtcagcggtggg
gtactggctcatgccaatggcgtaacgctggggcagccgttaaacgatacggtggtgctt
gttaaagcgcctggcgcaaaagatgcaaaagtcgaaaaccagacgggggtgcgtaccgac
tggcgcggttatgccgtgctgccttatgccactgaatatcgggaaaacagagtagcgctg
gataccaataccctggctgataacgtcgatttagataacgcggtcgctaacgttgttccc
acccgtggggcgatcgtgcgagcagagtttaaagcgcgcgttgggataaaactgctcatg
acgctaacccacaataataagccgctgccgtttggggcgatggtgacatcagagagtagc
cagagtagcggcattgttgcggataatggtcaggtttacctcagcggaatgcctttagcg
ggaaaagtgcaggtgaaatggggagaagaggaaaatgctcactgtgtcgccaattatcaa
ctgccaccagagagtcagcagcagttattaacccagctatcagctgaatgtcgttaa
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