KEGG   Escherichia coli K-12 W3110: JW2403
Entry
JW2403            CDS       T00068                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ecj  Escherichia coli K-12 W3110
Pathway
ecj03030  DNA replication
ecj03410  Base excision repair
ecj03420  Nucleotide excision repair
ecj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ecj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JW2403 (ligA)
   03410 Base excision repair
    JW2403 (ligA)
   03420 Nucleotide excision repair
    JW2403 (ligA)
   03430 Mismatch repair
    JW2403 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ecj03032]
    JW2403 (ligA)
   03400 DNA repair and recombination proteins [BR:ecj03400]
    JW2403 (ligA)
Enzymes [BR:ecj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     JW2403 (ligA)
DNA replication proteins [BR:ecj03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     JW2403 (ligA)
DNA repair and recombination proteins [BR:ecj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     JW2403 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     JW2403 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     JW2403 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      JW2403 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT RNA_ligase DZR_2 Prok-E2_C PUA_2 RNA_lig_T4_1 zf-NADH-PPase
Other DBs
NCBI-ProteinID: BAA16282
UniProt: P15042
Structure
LinkDB
Position
complement(2533607..2535622)
AA seq 671 aa
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMLRLLGS
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggaatcaatcgaacaacaactgacagaactgcgaacgacgcttcgccatcatgaatat
ctttatcatgtgatggatgcgccggaaattcccgacgctgaatacgacaggctgatgcgc
gaactgcgcgagctggaaaccaaacatccagaactgattacgcctgattcgcctactcaa
cgtgtaggcgctgcgccgctggcggctttcagccagatacgccatgaagtaccaatgctg
tcactggataacgtttttgatgaagaaagctttcttgctttcaacaaacgtgtgcaggac
cgtctgaaaaacaacgagaaagtcacctggtgctgtgagctgaagctggatggtcttgcc
gtcagtattctgtatgaaaatggcgttttagtcagtgccgcgacccgtggcgatggcacc
accggggaagatatcacgtctaatgtgcgtactattcgcgccattccgctgaagctgcac
ggagagaatatcccggcgcgtctggaagtgcgtggtgaagtgttcctgccgcaggcgggg
ttcgaaaagattaacgaagatgcgcgacgcacgggcgggaaagtgtttgctaacccacgt
aatgcggcagctggttcactgcgtcagcttgatccgcgtattacagcgaagcgaccgctc
acttttttctgctatggcgttggtgttctggaaggtggcgagctgccggatactcatctt
ggccgtttactgcaatttaaaaagtgggggttgccggtcagcgatcgggtaacgctttgt
gaatcggcggaagaagtgctggcgttctatcacaaagtggaagaagaccgcccgacgctg
ggctttgatatcgacggcgtggtgattaaggtcaactcactggcacagcaggagcagctt
ggctttgtcgcgcgtgccccgcgctgggcggtagcgtttaaattcccggcgcaggagcag
atgacctttgtgcgtgacgtcgagtttcaggttgggcgtactggcgcgattacgcctgtt
gcgcgtctggaacctgtccatgttgcaggcgtgctggtgagtaacgcaaccttacacaat
gcggatgaaatcgaacgtcttggtttacgcattggcgataaagtggtgattcgccgcgct
ggcgacgtgatcccgcaggtggttaacgtcgtgctttctgaacgcccggaagatacccgt
gaggttgtattcccgacgcattgtccggtatgtggttctgacgttgagcgtgtggaaggt
gaagcggttgcccgctgtaccggtggcctgatttgcggtgcgcagcgtaaagagtcgctg
aaacactttgtttcccgccgtgcgatggatgttgacggaatgggcgacaaaatcatcgat
cagctggttgaaaaagaatatgtccatactccggcagatctgttcaaactcaccgcaggc
aaactgaccggactggagcgtatggggccaaaatcggcacaaaacgtggttaacgcgctg
gaaaaagcgaaagaaaccacctttgctcgcttcctctatgcacttggcatccgtgaagtc
ggcgaggccaccgcagcaggtctggcggcatatttcggcacgctggaagcgctggaagcc
gcttcgattgaagagctgcaaaaggtgcctgatgttggcattgtcgttgcatcccacgtt
cacaacttctttgccgaagaaagcaaccgcaatgtcatcagcgagctgttggcggaaggt
gttcactggcctgcgccgatcgttatcaacgcggaagagattgacagcccgtttgctggt
aaaaccgtggtgcttacgggcagcttaagccagatgtcgcgtgatgacgctaaagctcga
ctggtcgaactgggcgcgaaagtcgcgggcagcgtgtcgaagaaaaccgatctggtgata
gcgggtgaagctgcaggatctaaactggcgaaggcgcaggaactgggcattgaagtcatc
gacgaagcggaaatgctgcgtttgctgggtagctga

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