Escherichia coli K-12 MG1655: b0925
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Entry
b0925 CDS
T00007
Symbol
ldtD
Name
(RefSeq) L,D-transpeptidase LdtD
KO
K21470
L,D-transpeptidase YcbB
Organism
eco
Escherichia coli K-12 MG1655
Brite
KEGG Orthology (KO) [BR:
eco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
eco01002
]
b0925 (ldtD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
eco01011
]
b0925 (ldtD)
Peptidases and inhibitors [BR:
eco01002
]
Cysteine peptidases
Family C82
b0925 (ldtD)
Peptidoglycan biosynthesis and degradation proteins [BR:
eco01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
b0925 (ldtD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-GeneID:
945541
NCBI-ProteinID:
NP_415445
Pasteur:
ycbB
RegulonDB:
ECK120001228
ECOCYC:
EG11253
ASAP:
ABE-0003142
UniProt:
P22525
Structure
PDB
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All DBs
Position
981047..982894
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AA seq
615 aa
AA seq
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MLLNMMCGRQLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIM
AGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQL
AEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFIANIPVKGTRWLYSSKP
YALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYAAMHESLLALLCDTKPWPQLTGK
ATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMD
KQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLA
LNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVV
VNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLP
FRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANM
LLQDAGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPA
RSSSQIVSKAEQLIR
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttaatatgatgtgtggtcgtcagctgtcggcaatcagtttgtgcctggccgta
acattcgctccactgttcaatgcgcaggccgatgagcctgaagtaatccctggcgacagc
ccggtggctgtcagtgaacagggcgaggcactgccgcaggcgcaagccacggcaataatg
gcggggatccagccattgcctgaaggtgcggcagaaaaagcccgcacgcaaatcgaatct
caattacccgcaggttacaagccggtttatcttaaccagcttcaactgttgtatgccgca
cgcgatatgcaacccatgtgggaaaaccgtgatgctgttaaagccttccagcaacagctg
gcagaggtggcgattgccggtttccagccgcagtttaataaatgggtagagttactgacc
gatcctggtgttaacgggatggcacgcgacgtggtgctctctgatgcgatgatgggctat
ctccatttcattgcaaatattccggtcaaaggcactcgctggctatatagcagtaaacct
tatgcacttgcaacgccgccgctctcggtgattaaccaatggcagctggcgctggataaa
ggtcaattgcctacgtttgttgcaggactggcaccgcagcatccgcaatatgcggcgatg
catgaatcgttactggccttactctgtgacaccaaaccgtggccccaactgaccggcaaa
gcaacgttgcgcccagggcagtggagtaacgacgtaccggcgttgcgcgaaatattgcaa
cgcacaggcatgttggacggggggccgaaaattactctacctggcgatgacacgccaact
gacgcggtagtcagcccatccgctgttactgttgaaacagcagaaactaagccgatggat
aagcaaacgacgtctcgtagtaaacctgcgcctgccgttcgcgccgcctacgataatgaa
ctggtggaagccgttaaacgttttcaggcatggcaaggattgggggcagatggtgctatt
ggcccggcaacacgtgactggttaaacgtaacgcccgcccagcgtgctggtgtgttggct
ctcaacatccagcgattgcgcttgctgccaacagagctttctaccgggatcatggttaac
attccggcctattcgctggtctactatcagaacggcaatcaggtgctggattcgcgagtc
attgtcggtcgccccgatcgcaaaacgccgatgatgagcagtgcccttaacaacgtagtg
gtaaacccgccgtggaacgtacctccaactctggcacgcaaagatattctgccaaaagtg
cgcaacgatccgggatatctcgaaagccatggctatacggtgatgcgcggctggaacagc
agagaagcgattgacccatggcaggttgactggtctacaatcacggcctcgaatttaccg
ttccgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatg
ccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgat
acacgcgcattgagctcaggctgtgtacgagtgaataaagcttccgatctggcgaatatg
ctgttgcaggatgcaggctggaatgacaaacgtatttctgatgcgctgaagcagggtgat
acacgttacgtcaatattcggcagtcgattccggtgaatctctactacctgacggccttt
gttggtgcagatggtcgtacccagtatcgtacagatatttacaattatgatctgcctgcg
cgatccagctcgcaaatcgtatcgaaagcggaacaattaatcaggtaa
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