Escherichia coli APEC O78 (APEC): APECO78_22940
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Entry
APECO78_22940 CDS
T02445
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ecoa
Escherichia coli APEC O78 (APEC)
Pathway
ecoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APECO78_22940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecoa03019
]
APECO78_22940
03400 DNA repair and recombination proteins [BR:
ecoa03400
]
APECO78_22940
Enzymes [BR:
ecoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APECO78_22940
Messenger RNA biogenesis [BR:
ecoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APECO78_22940
DNA repair and recombination proteins [BR:
ecoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
APECO78_22940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AGC89305
LinkDB
All DBs
Position
4769317..4771146
Genome browser
AA seq
609 aa
AA seq
DB search
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP
ALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL
TATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIAL
STIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLR
KLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggagtccggagctaaacaggttttacaagaaacc
tttggctaccaacagtttcgccccggccaggaagaaattatcgacactgtgctttccggt
cgcgattgcctggtcgtcatgcccaccggtggcggaaaatccctttgctatcaaattcct
gccttattgctaaacggccttaccgtggttgtttcaccgctgatttcgttgatgaaagat
caggtggatcaactgcaagccaacggcgtggcggcggcgtgccttaactcgacgcaaacc
cgcgagcagcaacttgaagtgatgacaggctgtcgcaccgggcaaatccgcctgctttat
atcgcgccggaacgcctgatgctggataactttcttgagcatctggcgcactggaatccg
gtgttattagccgttgatgaagcgcactgtatctcccaatggggccacgatttccgcccg
gaatatgccgcgctcggtcagttgcgccagcggttcccgacgctgccgtttatggcgctg
accgccacagccgacgacaccacgcgccaggatatcgtgcgcctgctggggctgaacgat
ccgctgattcaaatcagcagttttgaccgtccgaatattcgctacatgctgatggagaaa
ttcaaaccgctcgatcagttgatgcgctacgtgcaggaacagcgcggtaagtccggcatt
atctactgcaacagccgggcgaaagtagaagacaccgctgcgcgcctgcaaagcaagggt
attagcgcggcggcctatcatgccgggctggaaaataatgtccgcgccgacgtgcaggag
aaattccagcgcgatgacctgcaaattgtggtggcgacggtggcgttcggcatgggcatc
aataaaccaaacgttcgcttcgtggtccactttgatattccgcgcaatatcgaatcctat
tatcaggaaaccggtcgcgccgggcgtgatggcctgcctgcggaagcgatgctgttttac
gatccggctgatatggcgtggctgcgccgttgtctggaagagaagccgcaggggcagttg
caggatatcgagcgccacaaactcaatgcgatgggcgcgtttgccgaagcgcaaacttgc
cgtcgtctggtattgctgaactattttggcgaagggcgtcaggagccgtgcgggaactgc
gatatctgcctcgatccgccgaaacagtacgacggttcaaccgatgctcagattgccctt
tccaccattggtcgtgtgaatcagcggtttgggatgggttatgtggtggaagtgattcgt
ggtgctaataaccagcgtatccgcgactatggtcatgacaaactgaaagtctatggcatg
ggccgtgataaaagccatgaacattgggtgagcgtgatccgccagctgattcacctcggc
ctggtgacgcaaaatattgcccagcattctgccctacaactgacagaggccgcgcgcccg
gtgctgcgcggcgaatcctctttgcaacttgccgtgccgcgtatcgtggcgctcaaaccg
aaagcgatgcagaaatcgttcggcggcaactatgatcgcaaactgttcgccaaattacgc
aaactgcgtaaatcgattgccgatgaaagcaatgtcccgccgtacgtggtgtttaacgac
gcaaccttgattgagatggctgaacagatgccgatcaccgccagcgaaatgctcagcgtt
aacggcgttgggatgcgcaagctggaacgctttggtaaaccgtttatggcgcttatccgc
gcgcatgttgacggcgacgacgaagagtag
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