Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_3536
Help
Entry
ECRM13516_3536 CDS
T03011
Symbol
gcvA
Name
(GenBank) Glycine cleavage system transcriptional activator GcvA
KO
K03566
LysR family transcriptional regulator, glycine cleavage system transcriptional activator
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Pathway
ecoh02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02026 Biofilm formation - Escherichia coli
ECRM13516_3536 (gcvA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecoh03000
]
ECRM13516_3536 (gcvA)
Transcription factors [BR:
ecoh03000
]
Prokaryotic type
Helix-turn-helix
LysR family
ECRM13516_3536 (gcvA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
MarR_2
Motif
Other DBs
NCBI-ProteinID:
AHG16170
LinkDB
All DBs
Position
complement(3491873..3492790)
Genome browser
AA seq
305 aa
AA seq
DB search
MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSL
LLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSAY
PGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGEKPL
KTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALAN
NVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAAAEQEKFR
FRYEQ
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgattaccaccgctaaatgccttacgagtttttgatgccgcagcacgccat
ttaagtttcactcgcgcagcagaagagctttttgtgacccaggccgcagtaagtcatcaa
atcaagtctcttgaggattttttggggctaaaactgttccgccgccgtaatcgttcactc
ctgctgaccgaggaagggcaaagctatttcctcgatatcaaagagatattttcgcaatta
accgaagcgacgcgtaaactccaggcccgtagcgccaagggggcgttgacggtcagttta
ctccccagtttcgccattcattggttggttccgcgactttccagctttaattcagcttat
ccgggaattgacgttcgaatccaggcggttgatcgtcaggaagataagctggcggatgat
gttgatgtggcgatattttatggtcggggcaactggccggggctacgggtggaaaaactg
tacgccgaatatttattgccggtgtgttcgccgctactgctgactggcgaaaaacccttg
aagaccccggaagatctggctaaacatacgttattacatgatgcttcgcgccgtgactgg
cagacatatacccgacagttggggttaaatcatatcaacgttcagcaagggccaattttt
agccatagcgccatggtgctgcaagcggctatccacgggcagggagtggcgctggcaaat
aacgtgatggcgcaatctgaaattgaagccggacgtcttgtttgcccgtttaatgatgtt
ctggtcagtaaaaacgctttttatctggtttgtcatgacagccaggcagaactgggtaaa
atagccgcctttcgtcaatggatcctggcgaaagccgctgctgaacaagaaaaattccgc
tttcgttatgaacaataa
DBGET
integrated database retrieval system
