Escherichia coli O8 IAI1 (commensal): ECIAI1_0833
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Entry
ECIAI1_0833 CDS
T00828
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
ecr
Escherichia coli O8 IAI1 (commensal)
Pathway
ecr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECIAI1_0833 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecr03019
]
ECIAI1_0833 (rhlE)
Messenger RNA biogenesis [BR:
ecr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECIAI1_0833 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
UTP25
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CAQ97698
LinkDB
All DBs
Position
880478..881842
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AA seq
454 aa
AA seq
DB search
MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK
RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI
GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGGAKSA
SAKPAEKPSRRLGDAKPAGEQQRRRRPRKPAAAQ
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattctttgggtttaagccctgatatcctgcgcgccgttgccgagcagggt
taccgtgaacccacccctattcagcagcaggcgatccctgcggtgctggaaggccgcgac
ctgatggctagcgcccagaccggtaccggtaaaacagcgggctttacgctgccgctgttg
caacacctgatcactcgccagccgcacgccaaagggcgtcgtccggtacgtgcgctcatt
cttaccccgacccgtgaactggctgcgcagattggcgaaaacgtccgtgattacagcaaa
tatttgaacattcgttcgctggtggtgtttggcggtgtcagcattaacccgcaaatgatg
aagctgcgcggcggcgttgatgttctggtggcaacaccgggacgtttgctggacctggaa
catcaaaatgcagtgaagctggatcaggttgaaatcctcgtcctcgatgaagctgaccgc
atgctcgacatgggctttatccacgatatccgtcgcgtgttaacaaaactgccagcgaag
cgccagaacctgctgttctctgcgaccttctctgacgatattaaagccctggcggaaaaa
ctgttgcacaacccgctggaaatcgaagtggcacgccgcaataccgcgtctgatcaggtg
acccagcacgttcactttgtcgataagaaacgcaaacgcgaattgctgtcgcacatgatt
ggtaaagggaactggcagcaggtgctggtgtttacccgtaccaaacacggcgctaaccat
ctggctgagcagctcaataaagatggcatccgtagtgcggcgatccacgggaataaatcg
caaggtgcgcgtacccgtgcgctggctgattttaaatcgggtgacattcgcgtactggtg
gcgaccgatatcgctgcgcgcggtctggatatcgaagagttgccgcacgtcgtcaactat
gaactgccaaacgtaccggaagattatgtccaccgtatcgggcgtaccggtcgtgcggct
gctaccggtgaagcgttgtcgctggtgtgtgttgatgaacacaaactgctgcgtgatatc
gaaaaactgctgaaaaaagagatcccgcgcattgcgattccgggctatgagccggacccg
tcaatcaaagccgaaccgatccagaacggtcgccagcaacgtggcggcggcggtcgtggg
caaggtggtggtcgcggtcaacagcaaccacgccgtggggaaggtggcgcaaaatctgca
agcgcgaaacctgcagaaaaaccgtctcgccgcctcggcgatgccaaaccggcaggcgaa
caacaacgtcgccgccgtccgcgtaaacctgctgctgcgcagtaa
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