Enterococcus faecalis OG1RF: OG1RF_12438
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Entry
OG1RF_12438 CDS
T01882
Symbol
ymdA
Name
(GenBank) 2',3'-cyclic-nucleotide 2'-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
efi
Enterococcus faecalis OG1RF
Pathway
efi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OG1RF_12438 (ymdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efi03019
]
OG1RF_12438 (ymdA)
Messenger RNA biogenesis [BR:
efi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OG1RF_12438 (ymdA)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
Propep_M14
KH_2
Motif
Other DBs
NCBI-ProteinID:
AEA95125
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Position
complement(2572110..2573666)
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AA seq
518 aa
AA seq
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MVLNILLAIVGLIVGLGLGFVIAKSRHDKAINGAKISASSILENARKESETLKKEALLEA
KEENQKYRSEIESELKESRLELKSQENRLIQREQTLDRKDDSLEKREGSLEEKEEKLGAR
QQLIDEREKEVENLINQQHQELERIASLSKEEAKSIIMKSTEEELNHELTLMVKESEQRA
KEESDRKAKNLLSLAIQRCAADSVSETTVSVVTLPNDEMKGRIIGREGRNIRTLETLTGI
DLIIDDTPEAVVLSGFDPIRREIARMTLEKLIQDGRIHPARIEEMVEKSRKEMDERIREY
GEQAAFEVGAHTLHPDLIKILGRLRFRTSYGQNVLNHSIEVAKLAGVLAAELGEDVQLAK
RAGLLHDIGKALDHEIEGSHVEIGAELAAKYKENSVVINAIASHHGDVEATSVISVLVAA
ADALSAARPGARSESLENYIRRLENLENISNSFEGVDSSFAVQAGREVRVMVKPEEISDL
ESVRLVRDIRKKIEDDLDYPGHIKVTVIRETRAVDYAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggttttaaatattctcctcgctatcgtcggtttgattgtcggtcttggtttaggattt
gttattgcaaagtcacgtcatgataaagcaataaatggtgcaaaaatttcagcgtcgagt
attctcgagaacgctcggaaagaatcagaaacactgaaaaaagaagcattgctagaagct
aaggaagagaaccagaagtatcgttcagaaattgaaagtgagttgaaagaaagcagatta
gaacttaaatctcaagaaaatcgtttaattcaacgggaacaaacgttggatcgtaaagat
gactctcttgaaaaacgtgaaggctcactggaagaaaaagaagagaaacttggtgctaga
cagcaattaattgatgagcgagaaaaagaagtagaaaacttaattaatcagcaacatcaa
gaattagaacgaattgcttccctttcaaaagaagaagcaaaatcgattattatgaagtca
acagaagaagagttgaatcatgaactaaccttgatggtcaaggagtcagaacaacgtgcc
aaagaagaatctgatcgcaaagcgaagaacttgctttccctagcaattcaacgttgcgcc
gccgattctgtttctgaaacaactgtttccgtggtcactttaccaaatgatgagatgaaa
ggtcgcattattggtcgtgaaggacgtaatattcgtacattggaaacattaacagggatt
gacttaatcattgatgatacgccagaagcggttgtgttatccggatttgatccaatcaga
cgagaaatcgctcgaatgaccttggaaaaattaatccaagatggtcggattcatcccgct
cgtatcgaagaaatggtagaaaaatcacgtaaagaaatggatgaacggattcgtgaatac
ggagaacaagcagcctttgaagtaggtgctcatacgttacatcctgatttaattaaaatt
ttaggccgtttacgtttcagaacaagttatggtcaaaatgtcttgaaccactcaatcgaa
gtagcaaaactggctggcgttttagccgccgaattaggcgaagatgttcaattagccaaa
cgtgcaggtttactacatgatattgggaaagcattggatcatgaaattgaaggttctcac
gttgagattggcgcagaattagctgcgaaatataaagaaaattcagtagttattaatgcc
attgcctcgcatcatggtgatgtggaagcaacctcagttatttctgttttagtggcagcc
gcagatgcgttatctgcagcccgtccaggtgcacgtagtgaatcgttagaaaactacatt
cgccgcttagaaaacttagaaaatatttctaatagttttgaaggcgttgattcaagtttt
gctgttcaagcaggacgtgaagttcgtgtcatggtgaaaccagaagaaatttctgattta
gaatctgttcgtttagttcgagacattcggaagaaaattgaagatgacttggattatcca
ggacatatcaaagtaacggttatccgtgaaacacgtgccgttgactatgcgaaataa
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