Duffyella gerundensis: EM595_1181
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Entry
EM595_1181 CDS
T04258
Symbol
ybiS
Name
(GenBank) putative L,D-transpeptidase YbiS
KO
K19235
L,D-transpeptidase YbiS
Organism
ege
Duffyella gerundensis
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ege01002
]
EM595_1181 (ybiS)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ege01011
]
EM595_1181 (ybiS)
Peptidases and inhibitors [BR:
ege01002
]
Cysteine peptidases
Family C82
EM595_1181 (ybiS)
Peptidoglycan biosynthesis and degradation proteins [BR:
ege01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
EM595_1181 (ybiS)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldt_C
YkuD
LysM
Motif
Other DBs
NCBI-ProteinID:
CUU23416
UniProt:
A0A0U5L207
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All DBs
Position
1:complement(1283495..1284823)
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AA seq
442 aa
AA seq
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MKKSIRAFFTVAIAALAFSQSAFAVVYPLPPANSRLIGDNLEITVPQDSKLPLEAFAAQY
QMGLSNLLEANPGIDVYLPQAGRKIIIPQQLILPDAPREGIVINSAEMRLYYYPKGTKTV
VVLPIGIGELGKDTPVNWTTTVQRKKDGPTWTPTKKMHEEYQARGETLPAVFPAGPDNPM
GLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRANDIKWLFDNVPVGTRVQFIDQPIKA
SVEPDGSRYVEVHNPLSTTEEQFTSREPVPLSITPAVSKVVVDASVDQAQIDAALKARTG
MPVKVNAAASDINNVPVPVAQAPGAQPQEQPMTPATTQGANIINSDAAPVMNGDQPSQPA
PVMNGEQPSQPAPVMNGEQPAQPAPVMNGEQPSQPAPVMNGEQPAQPAPATNGQQSAPVS
NGNAAAPDTVPQPPVLNGSNPS
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaagtattcgcgcgttcttcacagtagccatcgccgccctggcttttagccag
tccgcttttgcagtggtttatccccttccgccggctaacagccgcctgatcggcgataac
ctcgaaattaccgttccgcaggacagcaaacttccgctggaagcttttgctgcgcagtat
caaatgggcctgagcaacctgctggaagccaacccaggtattgatgtctatttgccgcag
gctggccggaaaatcattattcctcagcagctgattctgcctgacgcgccgcgtgaaggc
attgtgatcaacagcgccgaaatgcgtctttactactacccgaaaggcaccaaaaccgtg
gtggtgctgccgattggtatcggtgaactgggcaaagatacgccagtaaactggaccact
accgtgcagcgtaaaaaggatggcccaacctggacgccaaccaaaaaaatgcacgaagag
tatcaggcacgcggtgaaacgctgccagcggttttcccggccggtccggataacccgatg
ggcctgtatgcgctctacatcggtcgtctctatgcgattcacggtaccaacgctaacttt
ggtatcggcctgcgcgtcagccacggctgtgtgcgtctgcgtgctaacgacatcaaatgg
ctgttcgacaatgtgccggttggcacacgcgttcagttcatcgatcagccgatcaaagcc
agcgtagagccggacggttcgcgctacgttgaagtgcacaacccactctccaccaccgaa
gagcagttcacttcccgcgagccagtaccgttaagcatcacgccagcggtcagcaaagtg
gtggtggatgccagcgttgatcaggcgcagattgatgccgcgctgaaggcacgtaccggc
atgccggtaaaagtgaatgccgccgccagcgacatcaacaatgtaccggttccggtcgcg
caggcgcctggcgcccagccgcaggaacagccaatgacacccgccaccacgcagggtgcc
aacatcattaacagtgatgctgcgccagtgatgaacggtgatcagccgtcacagcctgcg
ccggtaatgaacggtgaacagccttcacaacctgcgccagtgatgaacggcgagcagcca
gcacagccagccccggtgatgaacggtgaacagccttcacaacctgcgccagtaatgaac
ggcgagcagccagcacagcctgcgccagcgaccaacggccagcagtcggcgccagtcagc
aatggcaacgccgcagcgccagacaccgtgccgcagccgccagtgcttaacggcagcaac
ccttcctga
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