Duffyella gerundensis: EM595_1450
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Entry
EM595_1450 CDS
T04258
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
ege
Duffyella gerundensis
Pathway
ege03030
DNA replication
ege03430
Mismatch repair
ege03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EM595_1450 (holB)
03430 Mismatch repair
EM595_1450 (holB)
03440 Homologous recombination
EM595_1450 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ege03032
]
EM595_1450 (holB)
03400 DNA repair and recombination proteins [BR:
ege03400
]
EM595_1450 (holB)
Enzymes [BR:
ege01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EM595_1450 (holB)
DNA replication proteins [BR:
ege03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EM595_1450 (holB)
DNA repair and recombination proteins [BR:
ege03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EM595_1450 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
CpeT
Motif
Other DBs
NCBI-ProteinID:
CUU23684
UniProt:
A0A0U5GKJ9
LinkDB
All DBs
Position
1:1566731..1567720
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AA seq
329 aa
AA seq
DB search
MSWYPWLNQPYRQIVAQLQAGRGHHALLISALPGMGDEALVWGISRWLMCQRPDGLKSCG
ECHGCQLMMASTHPDWYRLEAEKGKSSLGIDAVRAVNEKLYNFAQQGGAKIVWLPDAAQL
TEAAANALLKTLEEPPAKTWFFLSCREPSRLLATIRSRCLSWPLLPPDEAQSQAWLARQQ
EVAPEAALTALRLSAGAPGAALTLLEARSWQARDGLCDALSDAIQHDIMRLLPLLNHDDH
AQRLAWLISLLVDALKWQQGAGEFISNCDRQALVASLAGQMPASALTASLQEWTRCRDRL
LQINAVNRELLLTEQLLNWSLRLKPARTG
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgagttggtatccgtggctgaatcagccttaccggcaaatcgtcgctcaactgcaggcg
ggccgcgggcaccatgcgctgttgatctctgcgctgccgggcatgggggatgaggcgctg
gtctggggcatcagccgctggttaatgtgtcagcgccctgatggcctgaaaagctgcggt
gaatgccacggctgccagttgatgatggccagtactcatcctgactggtaccggctggaa
gcggaaaaaggcaaaagctcgctgggcattgatgcagtcagagcggtaaatgaaaagctc
tacaactttgcccagcagggcggcgctaagattgtctggttgcccgacgcggcgcagctg
acagaggctgccgctaatgccctgttgaaaaccctggaagagccaccggctaaaacctgg
ttttttcttagctgtcgcgagccatcgcgcctgctggctaccattcgtagccgctgcctg
agctggccgctgttacccccggatgaagcacaaagccaggcatggctggccaggcagcag
gaggtggcaccggaggccgctctgacggcgctgcggctctctgccggtgcgcctggtgcg
gcactgaccctgctggaggcgcgtagctggcaggcgcgtgacggtctgtgtgacgcgctg
tctgacgctatccagcacgacatcatgcggctactgccgctgctgaatcatgacgatcat
gcccagcggctggcgtggttaatcagcctgttagtggatgcgctgaaatggcagcagggc
gcaggtgagtttatcagtaactgcgatcgccaggcgctggtcgcttcgctggccggacaa
atgcccgccagtgcgctaaccgccagcctgcaggaatggacgcgctgccgcgatcggctg
ctacagattaacgcggtcaatcgcgaactgctgctgactgaacaattattgaactggagc
ctgcggctgaagcccgcacgcaccggctaa
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