Duffyella gerundensis: EM595_1463
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Entry
EM595_1463 CDS
T04258
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ege
Duffyella gerundensis
Pathway
ege03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EM595_1463 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ege03400
]
EM595_1463 (mfd)
Enzymes [BR:
ege01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EM595_1463 (mfd)
DNA repair and recombination proteins [BR:
ege03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EM595_1463 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
CUU23697
UniProt:
A0A0U5GKL4
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All DBs
Position
1:complement(1579263..1582757)
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AA seq
1164 aa
AA seq
DB search
MESYSLQNHEEIVKTTMPEQTRYSLPTRAGDQRQLGQLTGAASAVECADIIERHQGPVLL
ITPDMQTALRLHDEIRQFTREPVNSLADWETLPYDSFSPHQEIISSRLSTLYRLPGMTRG
LLIAPVNTLMQRVCPHSFLHGHALVMQKGQKQSRDLLRDQLEQAGYRHVDQVMAHGEYAT
RGALLDLYPMGSEQPYRIDFFDDEIDSLRLFDVDSQRTLEEVEAINLLPAHEFPTDKAAI
ELFRSQWREHFEVRREAEHIYQQVSKGTLPTGIEYWQPLFFSTPLPTLFSYLPANTLVIN
SGDIDSGSERFWQDINARYENRRVDPMRPLLPPESLWLRPDALNSELKQWPRVQLRSETL
AEKAANTNLDYQPLPPLAVQAQAKAPLDDLRRFLEQFEGATIFSVESEGRREALQELLAR
IKLVPKAIGCIDEAGNQGQYLMIGASENGFIDALRQRALICEGDLLGERVSRRRQDSRRT
INPDVLIRNLAELHPGQPVVHLEHGVGRYIGLTTLETGGITAEYLMLAYAGDAKLYVPVS
SLHLISRYAGGADENAPLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKVGFAFK
HDREQYQLFCEGFPFETTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFL
AVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQVLEQAVDGKI
DILIGTHKLLMTDLKWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLN
MAMSGMRDLSIIATPPARRMAVKTFVREFDDLVVREAMLREILRGGQVYYLYNDVENIEK
AAQRLAKLVPEARIAVGHGQMRERDLERVMNDFHHQRFNVLICTTIIETGIDIPTANTII
IERADRFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAKKRLEAIASLEDLGAGFA
LATHDLEIRGAGELLGEDQSGQMETIGFTLYMELLESAVDALKEGREPSLEDLTSNQTDI
EMRMPALLPESYIPDVNTRLSFYKRIASAASEAELDELKVELIDRFGMLPDPARNLLDIA
ALRLTARKLGVRRIEASEKGGFIEFAEKNKADPAWLIGLLQKDPQQWRLDGPTRLKFMRD
LGERKVRMQWVRDFMQQLQQNAAA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggaatcatacagcctgcaaaatcacgaagagatcgtcaaaacgactatgcctgaacag
actcgctattcccttcccaccagggccggagaccaacgtcagcttggtcagttgaccggc
gccgcttctgccgttgaatgcgccgacattattgaacgccatcagggcccggtattgctg
attacgcccgatatgcaaaccgccctgcgcctgcatgatgagatccggcagtttacccgt
gagccggtgaacagcctcgctgactgggaaacgctgccctatgacagcttttcgccgcat
caggagatcatctcttcgcgcctgtccacgctctatcgcctgccgggcatgacgcgcggc
ctgctgattgcgccggtgaacacgctgatgcagcgcgtctgtccgcacagttttctgcac
ggccacgcgctggtgatgcaaaaaggccaaaagcagtcgcgggatctgctgcgcgaccag
ctggagcaagcaggttatcggcatgtcgatcaggtgatggcgcacggtgaatacgccacg
cgtggcgcgctgctcgatctctatccgatgggcagtgagcagccctaccgcatcgacttt
tttgacgatgagatcgacagcctgcgtctgttcgacgtcgacagccagcgtacgctggaa
gaagttgaggcgattaacctgctgcccgcgcacgagtttcccaccgacaaagcggcgatt
gagctgtttcgcagccagtggcgcgaacattttgaagtgcgtcgcgaagccgagcacatt
tatcagcaggtcagcaaaggcacgctgcctaccggcattgaatactggcagccgctgttt
ttcagcacgccgttgccaaccctgtttagctatctgcccgccaacacgctggtgatcaac
agcggcgatatcgacagcggcagcgaacgtttctggcaggatatcaacgcccgctatgaa
aatcgccgcgtcgatccgatgcgcccgctgctgccaccggaatcgctctggctgcgccct
gacgcgctgaacagcgagctgaaacagtggccgcgcgttcagctgcgcagcgaaacgctg
gcggaaaaagccgccaacaccaatcttgattatcagccgctaccgccccttgccgtgcag
gcgcaggccaaagcgccgctcgacgatctgcgccgcttccttgagcagtttgagggcgcc
acgattttctcagtagaaagcgaaggtcgccgcgaagcgctccaggaactactggcccgc
atcaagctggtgcccaaggcgatcggctgcatcgatgaagcgggtaatcagggtcaatat
ctgatgatcggcgccagcgaaaacggctttattgatgctctgcgtcagcgggcactgatt
tgcgaaggcgatctgcttggcgaacgggtgagccgtcgccgccaggacagccgccgcacc
atcaatcccgatgtgctgattcgcaacctcgccgagctgcatccgggccagccggtggtg
catcttgagcacggcgtcggccgctatatcggcctgaccacgctggaaaccggcgggatt
accgcagaatatctgatgctggcctacgccggtgacgccaaactctacgtgccggtatcg
tcgttacacctgatcagccgctatgccggcggtgccgatgaaaatgcgccgctgcataaa
ctgggcagcgatgcctggtcgcgcgcgcggcaaaaagctgccgagaaagtgcgtgatgtc
gccgccgagctgctggatatttacgcccagcgcgctgccaaagtgggcttcgccttcaag
cacgatcgtgaacagtatcagctgttctgcgagggttttccgtttgaaaccacgccggat
caggcacaggcgatcaacgccgtgctgagcgacatgtgtcggccactggcgatggatcgg
ctggtgtgcggcgacgtcggctttggtaaaaccgaagtggcgatgcgcgccgccttcctg
gcagtggaaaatcataagcaggtggcggtgctggtgccgacgaccctgctggcgcagcag
cattatgacaattttcgcgatcgctttgccaactggccggtgcgcatcgaaatgctctcc
cgtttccgcagcgcgaaagagcagacacaggtgctggagcaggcggtagacggcaaaatc
gatattcttatcggcacgcacaagctgctgatgaccgatctgaaatggcgcgatctcggc
ctgctgattgtcgacgaagagcaccgctttggcgtgcgccacaaggaacgcatcaaagcg
atgcgcgccgacgtcgacattttaaccctgaccgccacgccaatcccgcgcacgctgaat
atggcgatgagcggcatgcgcgatctgtcgattatcgccacgccaccggcgcgtcgcatg
gcggtgaaaacctttgtgcgcgaatttgacgatctggtagtgcgcgaggcgatgctgcgt
gaaattctgcgcggtggccaggtttactatctctacaacgatgtggaaaacattgagaaa
gccgctcagcggctggcaaaactggtgccggaagcgcgcattgccgttggtcacggccag
atgcgcgagcgcgatctggagcgcgtgatgaacgatttccatcatcagcgtttcaacgtg
ttgatctgcaccaccatcattgaaaccggtatcgatattcctaccgccaataccattatt
attgagcgtgccgatcgctttggtctggcgcagctgcatcagctgcgtggccgcgtcggt
cgttcgcaccatcaggcctacgcctggctgctgacgccgcatccaaaagcgatgaccacc
gacgccaaaaaacgccttgaggcgatcgcctcgctggaagatttaggtgccggttttgcg
ctggcaacgcacgatctggagatccgcggcgcgggtgagctgttgggtgaagatcagagc
ggccagatggagaccatcggctttacgctctatatggaactgctggagagcgcggtggat
gcgctgaaggaaggccgcgagccgtcgctggaggatctgaccagtaaccagaccgacatt
gagatgcgtatgcctgcgctgctgccggagagctacattccggacgtcaacacgcggctg
tcgttttacaaacgcatcgccagcgccgccagcgaagctgaactggatgagctgaaggtc
gagttgattgaccgcttcggtatgctgcctgacccggcgcgcaacctgctcgatatcgcc
gcgctgcgcctgaccgcgcgcaagctgggcgtgcgacgcatcgaagcgagcgaaaaaggc
ggtttcatcgaatttgccgagaagaacaaagccgatcctgcgtggctaatcggtttgttg
caaaaggatccgcagcagtggcgacttgatggcccgacgcgcctgaagtttatgcgtgac
ctgggtgaacgcaaggtacgcatgcaatgggtacgcgactttatgcagcagctgcagcag
aacgccgccgcctga
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