Eucalyptus grandis (rose gum): 104456005
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Entry
104456005 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03440
Homologous recombination
egr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104456005
03450 Non-homologous end-joining
104456005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
egr03032
]
104456005
03400 DNA repair and recombination proteins [BR:
egr03400
]
104456005
DNA replication proteins [BR:
egr03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
104456005
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
104456005
BRCA1-C complex
104456005
NHEJ (non-homologous end-joining)
MRX complex
104456005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
SbcC_Walker_B
Rad50_zn_hook
CCDC92
AAA_15
Crescentin
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
104456005
NCBI-ProteinID:
XP_010068993
LinkDB
All DBs
Position
8:complement(5110444..5126802)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKLVITFFKPLTLIVGPNGAGKTTIIECLKLCCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEAIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQDKTDSLKS
QLHDLEESIQTVDAKIHHTEITLKDLRKLQEQIATKTAERGTLFKEQQKQYASLAEENED
TDEELIEWKTKFDQRIALLESKIGKLEREMNDTETKSSFLKKTINESIWEISKLQTEAEA
HNSLKSERDSTIQKLFSRHNLGSLPSTPFDNDVALNFTNRVKSRLLDLEQDLQDKKKSNE
MELKASWDQYMDANDRWKNSDAQIQAKAEIKSGLLKRIKEKEDERDSFELQISNVDLSHI
DEREQSMRIEVERKTNQLAGREFESNIRQKQSEIYSNEQKIKALNREKDIMAGDSEDRVK
LALKKAELENHKKKHRKIIDDCKDKFRGVLKGRLPPDKDLKKEMTQALRAINLEFDDLGS
KCREAEKEVNMLQMKIQEANDSLSKLRKDSESRKRFIESKLLSLNQQSSDIDVYLRVLES
AKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDDFVKKQRVKAAS
SAEHMKVLAVESSNADSFFQQMDKLRVVYEEYTKIKKETIPHTEKSLDEFTKELDQKSQA
LDDVLGVLAQVKAEKESVEALLQPVDTADRLFQEIQSLQKQVDDLEYKLDFRGQGVRTME
EIQLELNALQSTKDNLHNELEKLRDEQRYMENDLSNIQIRWHTLREEKVAAANTLRDVKK
AEEELERLWEERNQLDLDEKHLTDALGHISKERDRLLNEYNDLKVKLNHEYDEQAEQKRS
YHQEVDSLLKLSSKIKEYHDLKKGERLKELQEKQAASESQLQGCDQRKREISEELNKSKD
LMRNQDQLRRNIEDNLNYRKTKSEVDDLTREIESLEDRILKIGGISTIEAELGKLSQERE
RLLSELNRCQGTMSVYQSNISKNKLDLKQAQYKXIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALV
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVSKDDHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggtggacaagatgctgatcaagggcatccggagcttcgacccggagaacaag
ctcgtcatcaccttcttcaagcccttgaccctcatcgttggccccaacggcgccggcaaa
accacgataatcgagtgcctgaagctgtgctgcaccggcgagctgcccccgaacgcgcgg
tccggccacagtttcatccacgaccccaaggtggcgggggagacggagacgaaggggcag
atcaagttgaggttcaagacggcggcgggtaaggacgtggtgtgcatccggtcgtttcag
ctgactcagaaggcgtccaagatggaattcaaggccatcgagagcgtcctgcaaactatc
aatcctcacaccggggagaaagtttgccttagctacagatgtgctgatatggacagggag
atccctgctctgatgggtgtgtcaaaggctgttctggaaaatgttatattcgttcatcaa
gacgaagcgaattggccattgcaagatccttccacattgaaaaagaagtttgatgatatc
ttctctgctactcggtacacaaaggccttggaagccataaagaaacttcacaaagatcag
gcacaagagataaaaacttacaagttgaagttagaaaatctccagacgttgaaagatgct
gcatataagctacgtgaaagcatttctcaagatcaagataaaacagattctttgaagagt
caattgcatgatttggaagaaagtattcaaactgtggatgctaaaattcatcatacagaa
ataacgctgaaagatttgaggaaactacaggaacagatagcgacaaaaactgctgaaaga
ggaactttgtttaaggagcagcagaagcagtatgcatctcttgctgaggagaacgaagat
acggacgaggagttgatagaatggaaaaccaagttcgatcaaagaattgccctcttggaa
tcgaaaattggcaagttagagagggaaatgaatgacacggagacaaaaagttctttcctt
aagaagacgatcaatgagtccatatgggaaataagcaaactgcaaactgaagctgaggct
cataattctttgaaaagcgaaagagattccaccattcaaaagcttttttcacggcacaat
ttggggtctcttccaagtactccatttgacaatgatgttgccttgaactttacaaatcga
gtgaaatcaaggctattggatcttgagcaggatttacaagataaaaagaaatcaaatgag
atggaacttaaggcttcgtgggatcagtacatggatgcaaatgatcggtggaaaaatagt
gatgctcagattcaggcaaaggcagagatcaagagtggccttttgaagcgcatcaaagag
aaggaagatgagcgtgactcattcgaacttcaaatatctaatgtcgatctatctcatata
gatgagagggagcagagcatgcgaattgaggttgagaggaaaacaaaccagcttgctgga
agagaatttgaatctaacatacggcagaagcagagtgagatttacagcaatgagcaaaaa
attaaggcgcttaatcgagagaaagatattatggcaggcgattcagaggacagagtaaaa
cttgctttgaagaaagctgagctagagaatcacaaaaagaaacacagaaagataattgat
gattgcaaggataaatttagaggagtcctgaaagggaggcttccacctgacaaggatttg
aagaaggaaatgactcaagctttgagggctattaatttggaatttgatgacttgggctcg
aaatgccgtgaagctgagaaggaagtgaatatgttgcagatgaaaatacaagaagctaat
gatagcttgtctaaacttcgcaaggattcggaatcacggaagagatttatagagtccaag
ctgctgtcgttgaatcagcaatcttctgatattgatgtttatcttagagtattggagtca
gcgaaggagaaaagggatgtccagaaaagtaaatataatattgctgatggtatgaggcaa
atgtttgatccttttgaaagagttgcccgtgctcatcatgtctgtccttgctgtgagcgt
cctttctctgcagaagaagaggatgatttcgtcaagaagcaacgagtgaaggctgctagt
tctgccgaacacatgaaggtgctggctgtggaatcctcaaatgctgactcattttttcag
caaatggacaagcttcgtgtggtgtacgaagaatatactaaaattaaaaaggaaacgatc
cctcacacagaaaaaagtttggatgagtttactaaagaattggatcaaaagtcccaggcc
cttgatgatgtactaggggttttggctcaagtaaaagcggagaaagagtccgttgaggcc
ttgctgcagcctgttgatacggctgaccgacttttccaagagatccagagtttgcagaag
caggttgatgatttggaatataagcttgatttccggggacaaggtgtgagaactatggaa
gagatccaattggagctgaatgctttgcagagcacaaaggataatttgcacaatgaattg
gagaagctcagggatgagcaaaggtatatggagaatgatttatccaacatccaaattcgc
tggcatactctgagggaggagaaagtagcagcagcaaatacgctccgtgatgtcaaaaag
gcggaagaggagctagagcgattgtgggaggagagaaatcagcttgacctcgatgagaag
catttgacggacgctcttggccatatatccaaagagagagataggcttctgaatgagtac
aatgatttaaaggttaaacttaatcatgagtatgacgagcaggctgaacagaaaagaagc
tatcatcaagaagtggattcactactcaaattatcttccaaaatcaaggagtaccatgat
ctcaagaaaggagagaggttgaaagagctgcaagaaaagcaagctgcatcagaatctcag
cttcaaggttgtgatcagaggaaacgagaaatttcagaagaacttaacaaaagtaaggac
ttgatgaggaatcaggatcaacttagaagaaacatcgaggataacctaaactaccgaaag
acaaaatctgaagtagatgaccttacccgtgaaattgaatctctagaggacagaatactc
aaaattggtggcatttctaccattgaagctgaacttgggaaactttcacaagaaagagag
aggctactttctgagctaaacaggtgtcaaggaacgatgtctgtctaccagagcaacatt
tctaagaataaattagatcttaagcaagcccagtacaaanacattgacaaacgatatttt
gaccagttaatacagctcaagaccacggagatggcaaacaaggatctggacagatactac
aatgcccttgacaaagctcttatgcgattccacactatgaaaatggaagaaataaataaa
atcataagggaactgtggcaacaaacttataggggacaagatattgactacatcagaata
cattcagactcggaaggtgctgggactcgatcatacagctacaaggttctcatgcaaact
ggcgacactgagttagaaatgagaggacggtgtagtgctggtcagaaggttcttgcttcg
cttatcattcgcttggctttagctgagaccttttgcctcaactgtggaattctagcactt
gatgaaccaactaccaatttggatggtcctaacgctgaaagtcttgcagcagctcttgtg
agaattatggaggacaggaagggacaggagaattttcagctgatagtcatcacacatgat
gaacggtttgcgcaacttatcggtcaacgacagcatgcagagagatattatcgtgtctca
aaggatgatcatcagcacagtataattgaagcccaggagatatttgactga
DBGET
integrated database retrieval system
