KEGG   Elaeis guineensis (African oil palm): 105060442Help
Entry
105060442         CDS       T03921                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu03030  DNA replication
egu03410  Base excision repair
egu03420  Nucleotide excision repair
egu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105060442
   03410 Base excision repair
    105060442
   03420 Nucleotide excision repair
    105060442
   03430 Mismatch repair
    105060442
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:egu03032]
    105060442
   03400 DNA repair and recombination proteins [BR:egu03400]
    105060442
Enzymes [BR:egu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     105060442
    6.5.1.6  DNA ligase (ATP or NAD+)
     105060442
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     105060442
DNA replication proteins [BR:egu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    105060442
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     105060442
DNA repair and recombination proteins [BR:egu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     105060442
   NER (nucleotide excision repair)
    Other NER factors
     105060442
   MMR (mismatch exicision repair)
    Other MMR factors
     105060442
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase UL42
Motif
Other DBs
NCBI-GeneID: 105060442
NCBI-ProteinID: XP_010942444
LinkDB All DBs
Position
Unknown
AA seq 748 aa AA seqDB search
MLLRASSLSFLKFFAPPPPSFLNPLPFSKFKTLNPSALLCFSSTDGTAMSARRTVAEALM
GGARAAAARKKAKNEKTPAPSPPPDPSPPRPKPTKTLDTPPDEKKKNAALELRKKCSDFN
PRAAAYWKDGEPVPFSFLVHAWELIGKESGRIAMTEILCNAFRTVIATTPGDLLATVYLT
ANKIAPPHEGLELGIGEASLVKALAEAYGRKEEHVKKQNSELGDLGLVAKASRSTQKLMF
QPKPLTIDKVFNTFLAIAKESGTNSHDKKKNHIKGLLVAATECEPLYITRLLQSKMRIGL
AEKTVLVALGQAAAYSETCPKPPLQTQSPFEEAAKIIKQVYSVLPSYDKIVPSLLQVGVW
KLPEACNFTLGVPIGPMLAKPTKAVSEIIDKFQGMEFTCEYKYDGERAQIHYMEDGSVEV
YSRNAERNTGKYPDVVSFISRFKKDTAKSFVLDCEIVAYDHEKQKILPFQVLSTRARKGV
ILSDIKVTVCTFGFDILYLNGQPLLQEQLKVRRQHLYSSFEEVPGVFQFATATITNDVEE
IQKFLEAAVNSSCEGLIIKTLDKDATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIAAFH
GRGKRTGVYGSFLLACYDEQNEEYQTICNIGTGFSESQLEERSASLRNKVIPTPKPYYQY
ADTVNPDVWFEPAEVWEVKAADLSISPVHCAASGIVDPNKGISLRFPRLVRVRDDKSPEQ
ATTSDQVADMYRAQKINHANNHEEEDDD
NT seq 2247 nt NT seq  +upstreamnt  +downstreamnt
atgctgttgagagcttcgagtttatcattcctcaaatttttcgctcccccacctccttcc
ttccttaaccccctcccattctctaaatttaaaaccctcaacccctccgccctcctctgc
ttctcctccacagacggcaccgccatgtccgcccgccgaaccgttgccgaggccctcatg
ggcggggcccgcgccgccgcagcccggaagaaggccaagaatgagaaaacccccgcccca
tccccgccaccggatccctcccctcctcgcccgaagcccaccaaaaccctagacacccca
ccggacgagaagaagaagaacgccgccctcgagctccggaagaagtgctccgatttcaac
cctagagccgccgcttactggaaggacggcgagccggtcccgttctcgttcctcgtccac
gcctgggaactgatcggaaaagagtcgggccgcattgccatgacagagatcctctgcaat
gcctttcggacggtgatcgccaccacacccggggatcttcttgccaccgtttacctcact
gcgaacaagatcgctccgcctcatgagggtcttgaacttggaattggagaagcatctctc
gtcaaggcgctcgctgaggcttatggtcggaaggaggagcacgtgaagaagcaaaacagc
gaattgggtgacttgggtcttgttgcaaaagccagccgttcgactcaaaagttgatgttc
cagcctaaacctttgacaatcgacaaggttttcaatacattcctggccattgcaaaggaa
tctggtacaaatagtcatgacaagaaaaagaatcatataaagggacttctggttgcagca
actgaatgtgaacctctgtatataactcgtcttctacagtcaaaaatgcgtatcggtttg
gcagagaaaactgtccttgttgctcttggacaagcagctgcatattctgaaacatgtcca
aagccacctttgcaaactcaatctccctttgaagaggctgcaaaaatcatcaaacaagta
tattctgtacttcctagctatgataaaattgtcccttctcttcttcaagttggggtgtgg
aaacttccagaggcatgcaattttactttaggtgtccctattggacctatgttagcaaaa
ccaacaaaggctgtatcagagatcatcgacaaattccagggaatggagttcacctgtgaa
tacaaatatgatggtgaacgtgcacagatacattacatggaggatggatcagttgaggta
tatagtcgtaacgcagaacggaatactgggaagtaccctgatgttgtcagttttatctca
agattcaaaaaggatactgcaaaatcatttgtgctggattgtgaaattgttgcttatgac
catgagaagcagaaaatcttacctttccaggtccttagcactcgtgctcgtaagggtgtg
atcttaagtgatataaaagtcacagtctgcacctttggctttgatattctgtatttaaat
ggccaacctcttctccaggagcaactcaaagttcgtcgacagcatctctacagttctttt
gaggaagtgccaggagtattccagtttgcaactgctaccataacaaacgatgtcgaggaa
atacagaaattccttgaagcagctgtcaactccagttgtgaaggattgattatcaaaaca
ttggataaagatgccacatatgagccttcaaagcggtctaacaactggctgaagttaaag
aaagattacatggagagcattggtgactcactagatttggtgcctattgctgcattccat
ggtcgtggaaaacgtacaggggtttatggttcgtttcttcttgcttgctacgatgaacaa
aatgaagaataccaaaccatctgtaatataggtactggattttctgagtcacaacttgaa
gagcggtctgcaagccttcgcaataaagtgattcctacaccaaagccatattatcagtat
gctgatacagtgaatccggatgtatggtttgagccagcagaggtttgggaggtgaaagca
gcagatttgagtatcagtcctgttcattgtgctgctagtggcatagtcgatccaaataag
ggcatttctcttcgatttcctcgtttagtgcgtgttcgggatgacaaaagccctgaacaa
gccacaacgtctgatcaggttgctgacatgtatcgtgctcaaaagattaaccatgcaaat
aatcacgaggaagaggatgatgactaa

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