KEGG   Egretta garzetta (little egret): 104129965Help
Entry
104129965         CDS       T05152                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
egz  Egretta garzetta (little egret)
Pathway
egz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:egz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    104129965 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:egz03400]
    104129965 (LIG4)
Enzymes [BR:egz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     104129965 (LIG4)
DNA repair and recombination proteins [BR:egz03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     104129965 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme APG17 SKA1
Motif
Other DBs
NCBI-GeneID: 104129965
NCBI-ProteinID: XP_009641244
UniProt: A0A091JI15
LinkDB All DBs
Position
Unknown
AA seq 911 aa AA seqDB search
MASAPASQPSKKTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHDALHQK
EKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKGGKDAAKLLNYRTPA
GSRGEAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLIT
QSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSLS
DVSITLFSAFKPMLAAIADVQQIEKQMNNQMFYIETKLDGERMQMHKDGDVYKYFSRNGF
DYTQQFGPSPLDGSLTPFVHGVFKSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMVE
DSDLQTCFCVFDVLMVNDQKLGHEVLSRRYEILSSVFTPITGRMHVVQKKSARTRKEVID
ALNEAIDNREEGIMVKDPTSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSR
GGMMSHFLCAIAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPPC
NILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWHECMTL
DMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKIIGIAEQFKAPDLSNVSKVS
NVFEDVEFCVMTGMGKCSKSELESKIAECGGSVVQNPGPETYCVIVGAENVRVKNIIASN
KYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFARQYDCYGDSYTADTDVAQLKE
VFSRMKDNTVMPLDTIAELEERYSWNACQLSMFRGNTVYVDCYAVVNEPRTKIHGTTLSI
RALELRFYGAKVVPLLEEGISHVVIGEDHSRVKEVKALRRTFRKKFKIVSELWVTESVEE
GVPKNENQYLI
NT seq 2736 nt NT seq  +upstreamnt  +downstreamnt
atggcttccgcacctgcttctcagccttctaaaaaaacggtggcctctcacgtccctttt
gccgacctgtgctctactctggagcgaatacagacgtgtaagtctcgtccggagaaaacc
aagtatttcaaggatttcctggattcctggagaaaattccatgatgctcttcatcaaaaa
gagaaagacgtcacggattctttttacccagcgatgcgacttattcttccacagttggaa
agagaaaggatggcgtatggaattaaagagactatgcttgcgaagctgtatattgaactg
cttaatttaccgaaaggtgggaaagatgctgcaaagcttttaaattacaggacgcctgct
ggctcacgtggagaagctggagattttgcaatgattgcatactttgtgttaaagcctcgg
agcccgaaacaaggcaggctgacaatagagcaagtcaatgaacacttagatgcgatagca
aataacaacgctgctaaaaacaagggtctgttgaagaaaagccttcttcagttgattacc
cagagcacagcactggaacaaaaatggctcattcggatgattataaaggatctaaagctt
ggtgttagtcaacaaactatattttccatttttcatcctgatgctgctgaattacacaac
gtcacaactgatctggaaaaagtttgcaggcaactgcacgatccctctgtctctcttagc
gatgtttctatcacgttgttttctgcctttaaaccaatgctcgctgctattgctgacgtc
cagcaaattgagaaacaaatgaataaccagatgttctacatagaaactaagctggatggt
gaacgtatgcagatgcacaaagatggagacgtgtataaatatttttcccgaaatggattt
gactatactcagcagtttgggccttcccctcttgatggttcgttaacgccattcgtccat
ggcgtatttaagagcaatatacaaaattgcattctcgatggggaaatgatggcttacaat
cccgagacgcaaacctttatgcagaaaggaaacagatttgacataaaaagaatggtggag
gactctgatctgcagacatgcttctgtgtgtttgatgtattgatggttaacgatcagaag
ttgggtcacgaagtactaagcagaaggtacgaaatcttaagcagcgtatttaccccgata
acaggcaggatgcatgttgtacagaaaaagagtgccagaacgagaaaagaagtaattgat
gctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccacgtcc
acctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatacgtcaat
gggctgatggatgaactagaccttttaattgttggtggttactggggaaagggctcacgt
ggtggaatgatgtctcattttctgtgcgctattgcagagacgccccctccaaatgaaaaa
ccgactgttttccactctatttgccgtgttggctctggctatactatgaaggaattgtat
gatttaggtttgaagctggctaagcactggaagccctacaataggaaggatcctccctgt
aacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtcata
gttcagatcaaggcagccgagattgttaacagtgatatgtacaaaacggactgtactttg
agattcccccgaattgagaagataagagaggacaaagaatggcatgagtgcatgacttta
gacatgttagaagatctcagaagcaaagcggaagggaagctggcatctaagcaccttcac
atagatgagtatgatgagccacaagagaaaaaaaggaaaactgtatcaaaggtgaagaag
ataattggaatagctgagcaatttaaagctcccgatctttctaatgtaagcaaggtttca
aatgtgtttgaagatgttgagttttgtgttatgacaggaatgggaaaatgctcgaagtcg
gaactggaaagcaaaatagctgaatgtggcggcagcgtggtacagaacccagggccggag
acttactgtgtcattgtaggagctgagaacgtccgagtgaaaaacatcattgcttccaac
aagtatgacgtggtgagggcagagtggctccttcagtgttttcaaaccaagatgctggtg
ccttggcagccagcctttatgattcacatgtctcctgacacgaaagaacattttgctcgt
cagtacgattgctatggagacagctacacagcagacacggacgttgcacaactcaaggaa
gtgttctcgagaatgaaggacaatacggtgatgcctttggacacgattgcagagttagaa
gaacgttattcatggaacgcttgtcagctcagtatgttcagaggaaacactgtttatgtg
gactgttacgctgttgttaatgagcccagaaccaaaatccatggaacaacactatcaatt
agagctttggagctccgtttttatggtgcaaaagtagtccctctccttgaagagggcatc
tcccatgttgttataggagaagatcattcgcgggtaaaagaggtgaaagcactcaggaga
acatttaggaaaaaatttaaaattgtatctgagctgtgggtaacggagtcagtggaggaa
ggagtcccaaagaatgaaaatcagtacttaatttaa

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