KEGG   Egretta garzetta (little egret): 104131912Help
Entry
104131912         CDS       T05152                                 

Gene name
LIG3
Definition
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
egz  Egretta garzetta (little egret)
Pathway
egz03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:egz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    104131912 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:egz03400]
    104131912 (LIG3)
Enzymes [BR:egz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     104131912 (LIG3)
DNA repair and recombination proteins [BR:egz03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     104131912 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase
Motif
Other DBs
NCBI-GeneID: 104131912
NCBI-ProteinID: XP_009643422
LinkDB All DBs
Position
Unknown
AA seq 903 aa AA seqDB search
MAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCMFEKL
EKARATTKKIEDITDLEGWEELQDGEKELINKHISEANSKAASTPKKKVIVQAKLTATGQ
ITTKDPLALIAPSPKKFSGFTAKPKNLEDVSANASHKATLSAKKCDPKHKDCLLREFRKL
CAMVAEKPSYNVKTQIIQDFLKKGSGGDGFHGDVYLTIKLLLPGVIKIVYNLNDKQIVKL
FSRIFNCSQEEMVRDLEQGDVSETIRLFFEQSKCCPPAAKSLLTIQEVDEFLIQLSKLTK
EDDQQSVLQHITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQD
VVERVLKNQQEAEKVPGLKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKY
DGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGGQSMILDSEVLLIDNKTG
KPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCERRKFLHDNMVEIPXPDP
LLRDEACHESFRSSRYDHRVIREGLEGLVLKDTKGNYEPGKRHWLKVKKDYLNEGAMADT
ADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCSGGHDDATLARLQTELDMVK
ISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRCTR
IRDDKDWKTATNLQQLKELYQLSKEKADFNVVAGEEDESTAGSSGENEGNSRSSTPHSTI
KTPPSKSPAKAQKPEESKAVIGSPKKSEEKRGEKRKASEMDDNGKKTLLDIFTGVKLYLS
PSVKDFDKIRRYFIAYDGDLVPEFDTASATHVIGDIDDNPGAKRVSPNWIWQCIRKRRLV
APC
NT seq 2712 nt NT seq  +upstreamnt  +downstreamnt
atggcagagcagaggtactgcgtggactatgccaagcgtggcacggcaggctgcaagaag
tgcaaggagaagattgtgaaaggaatggtgcgcatcggaaagattgttcccaatcctttc
acggagtctggtggggacatgaaggagtggtaccatgtcaagtgcatgtttgagaagcta
gagaaggcccgggccaccaccaagaaaatcgaagacatcacagacttggaagggtgggaa
gagctacaagatggggagaaagaattaatcaacaagcacatctcagaagctaattccaag
gctgcaagtacgccgaagaaaaaagtgatagtccaagctaagctcactgccacaggtcaa
ataaccacaaaagatccattggctctcattgctccatcaccgaagaagttctctggcttc
acagccaagccaaagaatttggaagatgtctctgcaaatgcttcccacaaggctacccta
tctgcaaaaaaatgtgatccgaagcacaaagactgcttgctgcgagagttcaggaagctc
tgcgccatggttgctgaaaagcctagctataatgtgaaaacacagatcatccaggatttc
ctgaagaagggatctggaggagatggttttcatggtgacgtatacctgaccattaagctg
ctgttaccaggtgtcattaaaattgtttacaacttgaatgataagcagattgtaaagctg
tttagtaggatttttaactgcagccaagaagaaatggtccgggacctggaacagggagat
gtttccgagacgatacgcctcttctttgaacagagcaagtgttgtcctccagcagctaaa
agtctcctgaccatccaagaggtagatgaattcctaattcagctatcaaagctcactaag
gaggacgaccagcaaagtgtgctgcaacatatcactcgcagatgtacgggcaacgacctg
aaatgcatcatcaggctaattaagcatgacttgaaaatgaacgctggcgcaaagcatgtg
ttggatgctttggatcccaatgcttatgaggcgttcaaagcatcacgcaacctgcaggat
gtggtggagcgagtcctgaagaaccagcaggaggctgagaaggtgccaggtctgaagcga
accctcagcgtgcaggcctctctgatgaccccagttcagcccatgctggctgaagcctgc
aagtcaattgagtacgccatgaagaagtgcccaaacggcatgtatgcagagattaaatat
gacggtgagcgggtgcaggtccataaaaatggagatcatttcagctacttcagcagaagc
ctcaaacctgtcctccctcacaaggtagcccattttaaggacttcatcccccaggctttc
cctggtgggcaaagtatgatcctggattcagaagttcttctgattgataataaaaccggc
aagccgcttccttttgggactcttggtgtgcataagaaagctgctttccaagatgccaat
gtttgcttgttcgtgtttgactgcatctatttcaatgacatcagcctgatggacaggcct
ctgtgtgaacgtcgtaagtttctccacgataacatggttgaaatccccnaaccggatcct
cttctcagagatgaagcatgtcacgaaagcttcagatctagcagatatgatcaccgagtc
atccgtgagggactggaaggactggtgttgaaagatacaaagggtaattatgaaccggga
aagcgacactggctgaaggtgaaaaaggactacctaaatgagggcgcaatggctgacaca
gcagacctggtggtgctgggagctttctatggacaaggcagtaaaggtgggatgatgtcc
atcttcctcatgggctgctatgatcccaagagtgagaagtggtgcactgtgaccaagtgt
tccggtggccatgatgatgccaccttggcgcgtctgcaaacagagctggacatggtgaag
atcagcaaggatcctagtaaaattccaaggtggctaaaaattaacaaaatctactaccca
gacttcattgtcccagacccaaagaaagccccggtgtgggagatcacaggggctgaattc
tctaaagctgaagcccacactgcagatggcatctccattcgcttccctcgctgcacccgc
attcgagatgacaaagactggaaaacagccaccaacctccagcagcttaaggaactgtac
cagctctccaaagagaaggctgatttcaacgtggttgctggggaggaagatgagtccacg
gctggcagtagtggcgagaatgagggaaattccaggtcttccacgccacacagcactatt
aaaactcccccgagcaagtcgcccgcgaaagcccagaagccagaagaaagcaaagcagtc
attggatcccctaaaaaatcagaggaaaagcgaggggagaagcgaaaagcatctgagatg
gatgacaatggaaaaaagacgctgctggacatattcactggtgtgaagctgtacctgtcg
ccctccgtgaaggacttcgacaaaatccggcggtattttatagcgtatgatggggacctt
gtgccagagtttgacacagcctcagcaacgcatgttataggggacattgatgacaatcct
ggtgctaagcgtgtgtctcccaactggatctggcaatgcatccggaagcggagactggta
gccccctgctag

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