KEGG   Ehrlichia sp. HF: EHF_0539Help
Entry
EHF_0539          CDS       T03078                                 

Definition
(GenBank) formamidopyrimidine-DNA glycosylase H2TH domain protein
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
ehh  Ehrlichia sp. HF
Pathway
ehh03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ehh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    EHF_0539
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ehh03400]
    EHF_0539
Enzymes [BR:ehh01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     EHF_0539
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     EHF_0539
DNA repair and recombination proteins [BR:ehh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     EHF_0539
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Fapy_DNA_glyco H2TH
Motif
Other DBs
NCBI-ProteinID: AHX04657
UniProt: X5GC35
LinkDB All DBs
Position
complement(600310..600891)
Genome map
AA seq 193 aa AA seqDB search
MPELPEVEIICRTLSTEILNKTILNIEINRYDLRIPVTRDLCDIAIDNSISQITRKGKYI
ILMLSNQYYIIIHLGMSGNLICNENYIKQKEHNQIIFYLSDNKLLTFNDPRRFGIVISLN
YNQYTEFFKDFGIDALSGEFNTDYLYSTVHKKCTIKSLLMNNKFVIGIGNIYSTESLFLA
GISPNRLVKIYQL
NT seq 582 nt NT seq  +upstreamnt  +downstreamnt
atgccagaactacctgaagtagaaataatttgtagaacattatctactgaaattttaaac
aaaactatattaaatatagaaatcaatagatatgatttacgtataccagttacacgggat
ctatgtgatatcgctatagataattctatatctcaaataacccggaagggtaaatatatt
attttaatgctcagcaatcagtattacataattatacatttaggtatgagtggcaatttg
atttgtaatgagaattatattaaacaaaaagaacataatcagataattttttatcttagt
gataataaattacttacttttaatgacccaagaagatttggaatagtgatatcattaaat
tataatcaatatacagaattttttaaagattttggtattgatgcactatctggcgagttt
aatactgattatttgtatagtactgttcataaaaagtgtactataaaatctttattgatg
aataacaaatttgttattggtataggtaatatatattctacggaaagtctttttcttgca
ggaatatcacctaatagacttgtaaaaatttatcaattgtag

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