Edwardsiella ictaluri: NT01EI_2332
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Entry
NT01EI_2332 CDS
T00912
Name
(GenBank) transcription-repair coupling factor, putative
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eic
Edwardsiella ictaluri
Pathway
eic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NT01EI_2332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eic03400
]
NT01EI_2332
Enzymes [BR:
eic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NT01EI_2332
DNA repair and recombination proteins [BR:
eic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NT01EI_2332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
MFD_D3
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACR69503
UniProt:
C5B8D3
LinkDB
All DBs
Position
2230978..2234439
Genome browser
AA seq
1153 aa
AA seq
DB search
MSEQYRLTLPERYPLPARAGDVRQLGQLSGSACALECAEIAERHAGPVMLVVPDMQTALR
LRDEIPQFSRQWVTTLADWETLPYDSFSPHQDIISARLSCLYHLPGMARGIIILPINTLM
QRVCPHSFLHGHALVMKKGQRLSRDILRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPM
GSDEPYRIDFFDDEIDSLRLFDVDSQRTLNEVERIDLLPAHEFPTDQTAIELFRSQWREH
FEVRRDAEHIYQQVSKRIWPAGIEYWQPLFFNQPLPTLFSYLPEGTLLLGLGDLHQAAER
FWQDIEQRRASRGIDPMRPLLPPESLWMRVDELFAALKQWPRIQLIRDALDNHAGHTNLH
YQPLPTLAVEAQSKKPLANLQRFLAEFSGSVVFSAESEGRRETLLELLARIQVAPRLIAQ
LEEAEPGGRYIMVGASEHGFINAPLALALICESDLLGERVSRRRQDSRRTINTDTLIRNL
AELTPGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILSYAGDAKLYVPVSSLHLLSRYAG
GADDSAPLHRLGGDAWSRARQKAAEKVRDVAAELLDIYAMRAAKAGFAFRHDREAYQLFC
QGFPFETTADQAMAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHSGKQVAV
LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQVLADTVDGKVDILIGTHKLL
QGDVQWRDLGLLIVDEEHRFGVRQKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLS
IIATPPARRMAVKTFVREYDSLVVREAILRETLRGGQVYYLYNDVDTIQKAADRLATLVP
EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLA
QLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDLGAGFALATHDLEIRG
AGELLGDDQSGQMASVGFSLYMELLESAVTALKEGREPSLEDLTSQQTEVELRMPTLLPE
EMIPDVGTRLSFYKRIASAGDGDTLADLRAELIDRFGTLPDAARNLLQCAALRQQAAALG
IRRIEGHDKGGFIEFSDKNHVDPLYLIGLLQQQPGVFRLDGPSKLKFICDLSERQARLAF
VERLLADFAEHRI
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacaataccgtcttaccctgccagaacgttacccgttgcccgcgcgcgcgggc
gacgtccgccaactgggccagctgagcggctccgcctgcgcgctggagtgcgccgaaatc
gctgagcggcacgccggccccgtgatgctggtggtgcccgacatgcagaccgccctgcgt
ctgcgcgacgaaattccccagttcagccgccagtgggtcaccaccctggcagactgggag
acgctgccctacgacagcttctcgccgcaccaggatatcatctccgcccgcctctcctgc
ctctaccatctgccgggaatggcgcgcgggataatcatactgccgatcaatacgctgatg
cagcgcgtctgcccgcacagctttctgcacggccacgcgctggtgatgaaaaagggccag
cgtctgtcgcgcgatatcctgcgcgcccagctggagcaggcgggctaccgcagcgtggat
caggtgatggagcacggcgagttcgccacccgtggcgccctgctcgacctgttcccgatg
ggcagcgacgagccctaccgcatcgactttttcgacgatgagatcgacagcctgcgcctg
ttcgacgtcgacagccagcgtaccctgaacgaggtcgagcgcatcgatctgctgccggcc
cacgagtttcccaccgatcagacggccatcgaactgttccgcagccagtggcgcgagcac
tttgaggtgcgccgcgacgccgagcacatctaccagcaggtcagtaaaaggatctggccc
gccgggatcgaatactggcagccgctgttctttaaccaaccgctgccgacgctgttcagc
tacctgccggaagggacactgctgctgggactgggcgatctgcaccaggctgccgaacgc
ttctggcaggacattgagcagcgccgggccagccgcggcatcgatccgatgcgcccgctg
ctgccgccggaaagcctgtggatgcgcgtggatgaactgtttgccgccctcaagcagtgg
ccgcgcattcagctgatccgtgacgcgctcgacaaccatgccggacacaccaacctgcac
taccagccgctgccgaccctggcggtagaagcgcagagcaagaagcccctggctaacctg
cagcgcttcctagcggagtttagcggtagcgtggtgttcagcgcggaaagcgaaggccgt
cgcgaaacgctgctggagctgctggcgcgcattcaggtggcgccgcggctgatcgcccag
cttgaggaggccgagcccggcggccgctacatcatggtcggcgccagcgagcacggcttt
atcaacgccccgctggcgctggcgctgatctgcgaaagcgatctgctcggcgaacgcgtc
agccgccgtcgccaggatagccgccgcaccatcaacaccgacacgctgatccgcaacctg
gcagagctgacgcccggacagccggtcgtacacctggagcacggcgtgggccgctacggc
gggatgaccaccctggaggcgggcgggatcaagggcgagtacctgatcctcagctacgcc
ggtgacgccaagctgtacgtgccggtctcctcgctgcacctgctcagccgctacgccggc
ggcgccgatgacagtgcgccgctgcaccgtctgggcggcgacgcctggagccgcgcccgg
cagaaggccgcagaaaaagtgcgtgacgtggcggccgagctgctggatatctatgcgatg
cgcgccgccaaggcggggtttgccttccgccacgaccgcgaggcctaccagctgttctgt
cagggcttcccgtttgaaaccaccgcggatcaggcgatggcgatcaacgcggtgctcagc
gacatgtgccagccgctggccatggatcgcctggtgtgcggcgacgtcggcttcgggaaa
accgaagtggccatgcgcgccgccttcctagcggtgcacagcggcaagcaggtggcggtg
ctggtgccgaccaccctgctggcccagcagcactacgataacttccgcgaccgcttcgcc
aactggccggtgcgcatcgagatgatctcccgtttccgcagcgccaaagagcagacgcag
gtactggcggataccgtcgacggcaaggtcgatatcctgatcggcacccacaagctactg
cagggcgacgtacagtggcgcgatctggggctgctgatcgtcgacgaagagcaccgcttc
ggcgtgcgccagaaggagcgcatcaaggcgatgcgcgccgatgtggatattctgacgctc
acggcgacgccgatcccacgtaccctgaacatggcgatgagcggcatgcgcgatctctcc
atcatcgccacccctccggcgcggcgcatggcggtaaagacctttgtccgcgaatatgac
agcctggtggtacgcgaggccattctgcgtgaaaccctgcgcggcggtcaggtgtactac
ctgtacaacgacgtcgacaccatccagaaagccgccgatcgcctggcgaccctggtgccg
gaggcgcgcatcgccatcggccacggacagatgcgcgaacgcgagctggagcgggtgatg
aacgacttccaccaccagcgttttaacgtattggtctgcaccaccattatcgaaaccggt
atcgatattcccagcgccaataccattatcattgagcgggcagaccactttggcctggcg
cagctgcaccagctgcgcgggcgcgtcggacgctcctaccatcaggcctatgcctacctg
ctcaccccgccgcccaaagcgatgaccgtcgatgcgcagaagcggctggaggcgattgcc
tcgctggaggatctcggcgccggctttgccctggcgacgcacgatctggagatccgcggc
gccggtgagctgctgggcgatgatcagagcggccagatggccagcgtcggcttctcgctg
tatatggagctgctggaaagtgcggtcacggcgctgaaagaggggcgcgaaccctccctg
gaggatctcaccagccagcagaccgaggtggagctgcgtatgcctaccctgctgccggag
gagatgatccccgatgtcggcacccgtctctccttctacaagcgtatcgccagcgccggc
gacggggataccctcgccgacctgcgcgcggagctgatcgatcgcttcgggacgctgccc
gatgcggcgcgtaatctgctgcagtgcgccgcactgcgccagcaggccgcggcgctgggg
atccgtcggatcgaggggcacgataaggggggattcatcgagttcagcgacaagaaccac
gtcgatccgctgtatctgatcggcctactgcagcagcagccgggggtcttccggctggac
ggccccagcaagctgaagttcatctgcgatctcagcgagcgtcaggcgcgcctcgccttc
gtcgagcgtctgctggccgacttcgccgaacatcggatctag
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