Escherichia coli clone D i2: i02_3099
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Entry
i02_3099 CDS
T02004
Symbol
ygdE
Name
(GenBank) putative RNA 2'-O-ribose methyltransferase
KO
K06968
23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:
2.1.1.186
]
Organism
eld
Escherichia coli clone D i2
Brite
KEGG Orthology (KO) [BR:
eld00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
eld03009
]
i02_3099 (ygdE)
Enzymes [BR:
eld01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.186 23S rRNA (cytidine2498-2'-O)-methyltransferase
i02_3099 (ygdE)
Ribosome biogenesis [BR:
eld03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
i02_3099 (ygdE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RLMM_N
RlmM_FDX
FtsJ
MIT_C
Spt5-NGN
Motif
Other DBs
NCBI-ProteinID:
AER85642
LinkDB
All DBs
Position
complement(3103545..3104645)
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AA seq
366 aa
AA seq
DB search
MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIYECYQPDDGDKLIRELP
FSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGELRVEVADTNESKELLKFC
RKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYTGYSYSSNNSPFYMGIPRLKF
PADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVD
NGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRE
TIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIWAAVG
GRRDER
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaataaggttgtattgctgtgccgtccgggctttgaaaaagagtgcgccgcagaaatt
accgataaagccggccagcgggaaattttcggttttgcccgcgtgaaagagaatgcgggt
tatgtcatttatgaatgttatcaacctgatgatggcgataagttaatccgtgagctgccg
ttcagttcattaatttttgcccgccagtggtttgtagtgggggaactcctgcagcatttg
ccgccagaagatcgtattacccccattgtcggcatgttacagggcgtagtagagaagggc
ggtgaactgcgtgttgaagttgccgataccaacgaaagcaaagagttgctgaaattctgc
cgtaaattcaccgtgccgctacgcgctgccttgcgtgatgcgggggtgctggcgaactat
gaaacgccgaagcgtccggttgtgcatgtattctttattgcaccaggctgttgctatact
ggttactcatacagcagcaataattcgccgttctatatgggcattccgcgcctgaaattt
ccggcagatgcgccgagtcgttccacgctcaaactggaagaggcatttcatgtgtttatt
cccgcggatgagtgggatgaacgcctggcgaacgggatgtgggcggtggatttaggtgct
tgcccaggcggctggacctaccaactggtgaagcgcaacatgtgggtttattccgtcgac
aacggcccgatggcgcaaagtctgatggataccgggcaggtgacgtggctgcgggaagac
ggtttcaaattccgtccgacacgcagcaatatctcctggatggtatgcgatatggttgaa
aaaccggcgaaagttgcggcattaatggcgcagtggctggttaatggctggtgccgtgaa
actatcttcaatctcaaactgccgatgaaaaaacgctacgaagaagtgtcacacaatctg
gcgtatattcaggcacagcttgatgaacatggcataaatgctcagattcaggcgcggcag
ttgtatcacgatcgcgaagaagtgacggtgcacgtccgccgtatctgggctgcggtgggt
ggtcgtcgcgacgagcgataa
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