Escherichia coli clone D i2: i02_3608
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Entry
i02_3608 CDS
T02004
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
eld
Escherichia coli clone D i2
Pathway
eld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
i02_3608 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eld03019
]
i02_3608 (pnp)
03016 Transfer RNA biogenesis [BR:
eld03016
]
i02_3608 (pnp)
Enzymes [BR:
eld01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
i02_3608 (pnp)
Messenger RNA biogenesis [BR:
eld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
i02_3608 (pnp)
Transfer RNA biogenesis [BR:
eld03016
]
Prokaryotic type
tRNA degradation factors
i02_3608 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
aRib
KH_2
DUF2110
SLS1_KH2
DUF5813
Motif
Other DBs
NCBI-ProteinID:
AER86142
LinkDB
All DBs
Position
complement(3613480..3615702)
Genome browser
AA seq
740 aa
AA seq
DB search
MSLVARMRRRSGINTSTVRYCLRKRKDITLLNPIVRKFQYGQHTVTLETGMMARQATAAV
MVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLI
ARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGA
ARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQ
QQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVD
VIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRT
GVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETG
MVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALM
DAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKI
EGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGK
GGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYNGKVTR
IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE
ATEQSQPAAAPEAPAAEQGE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
ttgtcattagtcgcgaggatgcgcagaagatcgggtattaacaccagtaccgtaaggtac
tgtctaagaaagagaaaggatattacattgcttaatccgatcgttcgtaaattccagtac
ggccaacacaccgtgactctggaaaccggcatgatggctcgtcaggctactgccgctgtt
atggttagcatggatgacaccgcggtatttgttaccgttgttggtcagaaaaaagccaaa
ccaggtcaggacttcttcccgctgaccgttaactatcaggagcgtacctacgctgctggt
cgtatcccgggtagcttcttccgtcgtgaaggccgcccaagcgaaggcgaaaccctgatc
gcgcgtctgattgaccgcccgattcgcccgctgttcccggaaggcttcgtcaacgaagtt
caggttatcgccaccgtggtttctgttaacccgcaggttaacccggatatcgtcgcgatg
attggtgcttccgcagcactgtctctgtctggtattccgttcaatggcccgattggtgct
gcccgtgtaggttacatcaatgaccagtacgtactgaacccgactcaggacgaactgaaa
gagagcaaactggacctggttgttgccggtacagaagctgccgtgctgatggttgaatct
gaagctgaactgctgagcgaagaccaaatgctgggcgcagtggtgttcggtcatgaacaa
cagcaggttgttattcagaacatcaatgaactggtgaaagaagccggtaaaccgcgttgg
gattggcagccggagccggtaaacgaagcgctgaacgcgcgcgttgctgcgctggctgaa
gctcgtctgagcgatgcttaccgcatcaccgacaaacaagagcgttatgcgcaggttgat
gtcatcaaatctgaaaccatcgcgacactgcttgctgaagacgaaaccctggacgaaaac
gaactgggtgaaattctgcacgctatcgagaaaaatgttgttcgtagccgcgtactggca
ggcgaaccgcgtatcgacggtcgtgaaaaagatatgatccgtggtctggatgtgcgtact
ggtgtgctgccgcgtactcacggttctgcgctgttcacccgtggtgaaacgcaggcgctg
gttaccgcaacgctgggtactgctcgtgacgcgcaggttcttgatgaactgatgggcgaa
cgtaccgataccttcctgttccactacaacttccctccgtactccgtaggcgaaaccggc
atggtcggttctccgaagcgtcgtgaaattggtcacggtcgtctggcgaagcgcggcgtg
ctggcagtaatgccggatatggacaaattcccgtacaccgtacgtgttgtgtctgaaatt
accgaatccaacggttcctcttctatggcttccgtgtgcggcgcgtctctggcgctgatg
gacgcaggtgtgccaatcaaagctgccgttgcgggtatcgcaatgggtctggtgaaagaa
ggcgacaactacgttgtactgtctgacattttgggcgacgaagatcacctgggcgatatg
gacttcaaagttgcgggttcccgtgacggtatctctgcattgcagatggatatcaaaatt
gaaggtatcaccaaagagatcatgcaggttgcactgaaccaggctaaaggtgcgcgtctg
catatcctgggggtaatggaacaggcgatcaacgcgccgcgtggcgatatctctgagttc
gcaccgcgtatccataccatcaagatcaacccggacaagatcaaagatgttatcggtaaa
ggcggttctgtaatccgtgctctgaccgaagaaaccggcaccaccatcgaaattgaagat
gacggtactgtgaagattgcagcgaccgacggcgagaaagcgaaacacgcgattcgtcgt
atcgaagagatcactgcagaaatcgaagtgggccgcgtctacaatggtaaagtgacccgt
atcgttgattttggcgcatttgttgccattggtggcggtaaagaaggtctggtccacatc
tctcaaatcgctgataaacgcgttgagaaagtgaccgattacctgcagatgggtcaggaa
gtaccggtgaaagttctggaagttgatcgccagggccgtatccgtctgagcattaaagaa
gcgactgagcaatctcaacctgctgcagcaccggaagctccggctgctgaacagggcgag
taa
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