Escherichia coli W: WFL_16800
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Entry
WFL_16800 CDS
T02101
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ell
Escherichia coli W
Pathway
ell03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ell00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WFL_16800 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ell03019
]
WFL_16800 (deaD)
03009 Ribosome biogenesis [BR:
ell03009
]
WFL_16800 (deaD)
Enzymes [BR:
ell01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WFL_16800 (deaD)
Messenger RNA biogenesis [BR:
ell03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WFL_16800 (deaD)
Ribosome biogenesis [BR:
ell03009
]
Prokaryotic type
rRNA helicases
WFL_16800 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AFH13006
LinkDB
All DBs
Position
complement(3522687..3524576)
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AA seq
629 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEQD
LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD
GRRFSGERREARAPRRDDSTGRRRFGGDA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaattcaggcagagtgtattccacatctg
ctgaatggccgcgacgttctgggtatggcccagacggggagcggaaaaactgcagcattc
tctttacctctgttgcagaatcttgatcctgagctgaaagcaccacagattctggtgctg
gcaccgacccgcgaactggcggtacaggttgctgaagcaatgacggatttctctaaacac
atgcgcggcgtaaatgtggttgctctgtacggcggccagcgttatgacgtgcaattacgc
gccctgcgtcaggggccgcagatcgttgtcggtactccgggccgtctgctggaccacctg
aaacgtggcactctggacctctctaaactgagcggtctggttctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggt
catcagaccgctctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatc
agccagagctactggactgtctggggtatgcgtaaaaacgaagcactggtacgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaatgcgactctggaa
gtggctgaagctcttgagcgtaacggctacaacagtgccgcgctgaacggtgacatgaac
caggcgctgcgtgagcagacactggaacgcctgaaagatggtcgtctggacatcctgatt
gcgaccgacgttgcagcccgtggcctggacgttgagcgtatcagcctggtggttaactac
gatatcccgatggattctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggt
cgtgctggccgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatt
gaacgtactatgaagctgactattccggaagtagaactgccgaacgcagaactgctgggc
aaacgccgtctggaaaaattcgccgctaaagtacagcagcagctggaaagcagcgatctg
gatcaataccgcgcactgctgagcaaaattcagccgactgcagaaggtgaagagcaggat
ctcgaaactctggctgcggcactgctgaaaatggcacagggtgaacgtactctgattgtt
ccgccagatgcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgtggtccg
cgcgatcgtaacgaccgtggcccacgtggcgaccgtgaagatcgtccgcgtcgtgaacgt
cgtgatgttggtgacatgcagctttaccgcattgaagtgggccgcgatgatggtgttgaa
gttcgtcatatcgttggcgcgattgctaacgaaggcgacatcagcagccgttacatcggt
aacattaagctgtttgcttctcactccactatcgaactgccgaaaggtatgccgggtgaa
gtactgcaacactttacgcgtactcgcattctgaacaagccgatgaatatgcagttgctg
ggcgatgcgcagccgcatactggcggtgagcgtcgtggcggtggtcgtggtttcggtggc
gagcgtcgtgaaggcggtcgtaacttcagcggtgaacgccgtgaaggtggtcgtggtgat
ggtcgtcgttttagcggcgaacgtcgtgaagcccgcgcaccgcgtcgtgatgactctacc
ggtcgtcgtcgtttcggtggcgatgcgtaa
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