KEGG   Escherichia coli P12b: P12B_c3298Help
Entry
P12B_c3298        CDS       T02030                                 

Gene name
dacB
Definition
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
  KO
K07259  serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
Organism
elp  Escherichia coli P12b
Pathway
elp00550  Peptidoglycan biosynthesis
Brite
KEGG Orthology (KO) [BR:elp00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    P12B_c3298 (dacB)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:elp01002]
    P12B_c3298 (dacB)
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:elp01011]
    P12B_c3298 (dacB)
Enzymes [BR:elp01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     P12B_c3298 (dacB)
   3.4.21  Serine endopeptidases
    3.4.21.-  
     P12B_c3298 (dacB)
Peptidases and inhibitors [BR:elp01002]
 Serine peptidases
  Family S13: D-Ala-D-Ala peptidase C family
   P12B_c3298 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:elp01011]
 Peptidoglycan biosynthesis and degradation
  DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
   P12B_c3298 (dacB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Peptidase_S13 Beta-lactamase2 Transpeptidase TrbL
Motif
Other DBs
NCBI-ProteinID: AFG42124
LinkDB All DBs
Structure
PDB: 

Position
3607037..3608470
Genome map
AA seq 477 aa AA seqDB search
MRFSRFIIGLTSCIAFSVQAANVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALP
ASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTLKRQDIRNMV
ATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYS
AQKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSE
PLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLK
IMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGLS
RHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGS
LQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN
NT seq 1434 nt NT seq  +upstreamnt  +downstreamnt
atgcgattttccagatttatcatcggattgaccagctgtatagcgttcagtgttcaggcc
gcaaatgttgatgagtatattactcaactccccgctggtgccaaccttgccctgatggtg
caaaaagtcggcgcgtcggcccccgctattgattaccacagtcagcagatggcgctgccc
gccagtacgcagaaagtgattactgcgctggcggcgttgattcaactcggccccgatttt
cgttttaccacgacgcttgaaaccaaaggcaatgtggaaaacggcgtacttaagggtgac
ttagtggcgcgatttggtgccgatccgacgttaaaacgtcaggatattcgcaatatggtc
gcgactttgaaaaaatctggcgtcaaccaaatcgatggcaatgtgttgatagatacctcc
attttcgccagccacgataaagcccccggctggccatggaatgacatgacacaatgcttt
agcgctccgcctgccgccgccatagttgaccgcaactgtttctccgtctcgctctacagt
gcccaaaaacccggtgatatggcctttatacgcgtggcatcttattaccccgttacgatg
ttcagccaggtacgcaccctcccccgtggttctgccgaagcgcaatactgcgaactggat
gtggtgccaggcgacctgaaccgctttacgctgacgggatgcctgccacaacgttctgag
ccgctcccgttggcttttgccgtacaggatggagccagctatgccggggcaattctgaaa
gatgagttaaaacaggcgggtatcacctggagtggaacactgctgcgccagactcaggtt
aacgaacctggaacggtagttgccagtaaacagtcggccccgctgcacgatctgcttaag
attatgctgaaaaagtcagacaacatgatcgccgatacggttttccgcatgataggccat
gcgcgcttcaatgtgcctggaacatggcgggccgggtcggacgccgtgcgtcagatcctg
cgccagcaagccggtgtcgatattggaaacaccattattgccgatggttcagggctttcg
cggcataacctgattgcccccgccaccatgatgcaggtgctgcaatacattgcccaacac
gacaatgaacttaactttatctccatgctgccgctggcgggctatgacggctctttgcag
taccgtgcaggtctgcatcaggcgggcgtggatggcaaagtctcagcgaaaaccggttcg
ttgcagggggtatataacctggcgggattcattaccacagcgagcgggcaacgaatggcg
tttgtgcaatatctttctggctatgcagtagaaccggcggatcagcgtaatcgccgtatt
ccgttagtgcgtttcgaaagccgtttgtataaagatatttaccagaacaattag

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