Esox lucius (northern pike): 105010731
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Entry
105010731 CDS
T04894
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
els
Esox lucius (northern pike)
Brite
KEGG Orthology (KO) [BR:
els00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105010731
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105010731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105010731
NCBI-ProteinID:
XP_019902837
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Position
LG06:23773975..23860746
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AA seq
732 aa
AA seq
DB search
MEEDQKWGVTGECVGRTCVEHPCKKRFWRNWKDVSGITVCIALSVLSLGFCILVYLRTSE
LQSRILNLEKQSDKQLSAWISLEQVEPVIFGRIDQILEEKLAARLPKTREAREAPHGCIC
PPGPPGSRGKRGRDGHPGPPGPPGRSGFPGDKGTMGIPGRMGLKGYTGEKGAPGEPGLSI
IGPRGPPGQPGTRGFPGFPGPIGLDGKPGQNGLKGDLGQRGPKGVPGEPGPKGEKGVCGD
YTHRGPFVQDLPVKTLAAIRSSQTLAFKQGEPGAQGPPGPPGPPGPSGTPGLNGASGPPG
KPGEPGKPGKDPRLLPGMKGEPGMPGIKGDVGPAGPEGPKGLKGDPGLKGDKGEPSAAGT
GIKGEPGTPGLPGLSGSKGDKGDQGLKGEPGSDGPAGPRGPPGIAGEPGKSEIINNENDI
RNVPLMGPPGLPGPPGVPGTPGTKGDVGLPGPPGLDGEKGPRGKPGEPGPVGPAGPEGPR
GEGGPMGFSGPKGDKGDMGPSGSPGLDGPTGENGHSGPPGPIGLPGPMGQKGESGDKGGK
PDMLYGPPGPPGPQGPVGPAGPEGREGPKGEPGIGIRGEKGASGSKGDKGDRGHLGLPGA
HGLDGRPGPVGLIGPVGVAGPTGPKGDRGFKGDSGVPGPIGPQGIPGLVGPQGLKGNRGE
RGKKGNRGTKGDKGDQGAPGLDAPCPLVCLDFNVKPGGKRKERIFQNPTSCLTNRSLWIV
IQLPFASDVNPL
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagatcaaaagtggggagttactggtgaatgtgttggtaggacttgcgttgag
cacccttgcaaaaagcgtttttggaggaattggaaagatgtgtctggtataactgtctgc
atcgcattatctgtattgtctcttggattttgcattcttgtttacctgaggacctcggaa
ctgcagtccaggatactaaaccttgaaaaacagagcgataagcagctctccgcgtggatc
tcgctcgagcaggtggaacccgttatctttggacgaattgatcaaattctagaagagaaa
ctggctgctcgacttcccaaaacacgagaggccagagaagctccccatggctgcatctgt
ccaccagggcctcctgggtcgaggggaaagagaggtcgtgatgggcatccaggacctcct
ggtccccccggacgatcaggctttccgggtgacaaaggaacaatgggaattcctggaaga
atggggttaaaaggatacacaggggagaagggagcaccaggggagccaggcctgtctatc
attggtccacgaggacctccaggacaaccaggaacccgaggcttcccaggcttcccgggt
ccgatcgggttggatggcaagcctggacagaatggcttgaaaggagacttgggtcaacgt
ggtcccaaaggagttccaggtgaacctggtccaaaaggggaaaagggtgtatgtggagac
tatacacataggggcccctttgtacaggatcttccggtgaaaacgctggctgctatacgt
tccagtcagactctggcgtttaagcagggtgagcctggagctcaaggcccaccaggacct
cctgggccccctgggccttcaggaacgcccggactaaatggcgccagtgggccaccgggt
aaaccaggtgaaccaggaaaacctggaaaagatcccaggctactaccaggaatgaagggt
gagccgggaatgccaggaataaagggtgatgttggccctgctggtcctgaaggccccaag
ggactgaagggagaccctgggctgaagggtgacaaaggtgagcccagcgcggcaggaact
ggcattaaaggagaacctggcacaccaggacttccaggtctttcaggttctaagggtgac
aagggcgaccaaggtctaaagggggaaccaggatctgacggcccagctggacccagaggt
cctccgggtatagcaggggagccagggaaatctgaaatcatcaataatgaaaatgatatt
cgtaacgtacctttgatgggtccacctgggctaccaggccctccaggggtccccggaaca
ccaggaacaaagggggatgttggacttcccggccctccgggtcttgatggagagaagggt
cctcgggggaagcctggtgagccaggtcctgttggcccagccggccctgaaggtcctaga
ggagaaggtggtcccatgggtttctcaggacccaagggagacaaaggggacatgggcccc
tctggatcacctggtttagatggccctactggtgaaaatggccattctgggccccctggc
cccattggattaccaggccccatgggtcaaaagggggagtctggagataagggaggaaag
cccgacatgctctatgggcccccagggcccccagggccccaaggaccagtcggtcctgca
ggacctgaaggacgagaagggccaaagggcgagcctggtataggcatacgaggcgagaag
ggggcttctggttcaaaaggcgataaaggggacaggggtcatcttggacttcctggggct
catggtttagacggcaggcctggtccagtggggctgatcggaccagttggtgtggcaggc
cccacaggaccaaagggagacagaggttttaagggagattcaggagtcccaggaccaatt
gggcctcaaggcatccctggtttagttggaccacaaggactcaaggggaaccggggggag
aggggcaagaaaggcaacaggggaactaaaggggataagggagaccaaggagcaccagga
ttagatgccccctgtccgttggtatgtcttgattttaacgtgaagcccggaggcaaaagg
aaggagcgaatatttcagaaccccacgtcctgcctgaccaacaggagtctctggattgta
attcaacttccttttgcctctgatgttaacccactttaa
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