KEGG   Esox lucius (northern pike): 105011066Help
Entry
105011066         CDS       T04894                                 

Gene name
lig3
Definition
(RefSeq) DNA ligase 3 isoform X1
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
els  Esox lucius (northern pike)
Pathway
els03410  Base excision repair
Module
els_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:els00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    105011066 (lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:els03400]
    105011066 (lig3)
Enzymes [BR:els01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     105011066 (lig3)
DNA repair and recombination proteins [BR:els03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     105011066 (lig3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 105011066
NCBI-ProteinID: XP_010869141
LinkDB All DBs
AA seq 1020 aa AA seqDB search
MQRLCITLIFKTVYNIRLGTLCKCQPTWKLGESYRFSASFQRLPSFRGIVPYILDSYRGT
KPPRKYSYFSDSHFRICWRHYFTNQSDMAEQRFCVEYAKRGTAGCKKCKDKIMKGLVRIG
KIVPNPFSESAGEMKEWYHAKCMFEKLERARATTKKIEDITDLEGWEELQDEDKELINKL
VGDLMAKTNASPKKKVQAKLNNSGQLSAPPADPSLNAPRKFSGFTAAKAGSSSSPGPTPA
KPNQGSPLSAQLCDPKHKDCLLREFRKLCAMVADKNSYNVKTQIIHDFLKKGSGGDKFKG
DLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFNCNQEEMVQDLEQGDVSETVRMFFEDS
KSFPPAAKSLLTIQEVDESLTRLAQLTKEDDQQKELEDISKKCTGNDLKCIIRLIKHDLK
MNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLKNQVDASNGSGPRKLLTIEASLMTPV
QPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDHFNYFSRSLKPVLPHKVAHF
KEFIPQAFVGGHSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDAKVCLFVFDCVYFN
GVSLMEKPLYERRKFLHDNMVEVPNRILFSEMKHVTRASDLAEMITRVIREGLEGLVLKD
LKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSK
KWCTVTKCSGGYDDAMLARLQKELDMIKISKEPSKIPGWLKIIKNYYPDFIIRDPEKAPV
WEITGAEFSKSEMHTADGISIRFPRMTRVRDDKDWKSATNLTQLKELFRISKERCDFEVK
AGPSKGGKGDKGSSEGESGSNSPPSTSHRPVTPSKTSNSNTPKAKAVKTEAPQPVPAMKR
KMPSEQQNAKKVKTEPVHHSNGQSKNGQIKPNPSKVVEARNEKTLLDIFSGVKLFLPDSV
QDHTKLRRYFVAFDGDLVPEYDAASATHTLMEPEEDSSAQRVTPLWIWECIRKRRVVPPC
NT seq 3063 nt NT seq  +upstreamnt  +downstreamnt
atgcagagattgtgcattacattgatatttaagactgtctacaatatacgtcttgggaca
ctgtgtaagtgtcagcccacctggaaactgggtgaatcttatcgcttctctgcaagcttc
caacgtctacctagttttaggggcattgtcccctatatattggatagctatcggggtaca
aagccccctcggaaatacagttatttctcagattctcatttcaggatttgctggcgtcac
tactttactaaccagtcagacatggcagaacagagattctgtgtggagtatgccaaacgt
ggcactgcgggatgtaagaagtgtaaggacaaaatcatgaagggcctggtccgtattggg
aagattgtgcctaaccccttcagtgaatctgctggggagatgaaggagtggtaccatgca
aagtgtatgtttgagaagctggagcgggcccgggcaaccactaagaagattgaggacatt
acagacttggaggggtgggaggagctgcaggatgaggacaaggagctgatcaacaaactg
gttggagacttgatggccaaaactaatgcgagcccaaagaagaaggtgcaagcaaagctg
aacaacagtggtcagctatcagctccacctgctgacccttctttaaatgctccacgaaag
ttctctggctttacagctgctaaggctggaagctcgagcagcccaggacccacaccagcc
aaacccaatcaggggagtcctttgtccgctcagctttgtgaccccaaacacaaggactgc
ctgctccgggagttccgcaagctttgtgccatggtggcagacaagaatagctataatgtc
aaaacacagatcatccatgactttctgaagaaaggctctggaggagataaattcaaggga
gatttgtacctgactgtaaagctgcttctcccaggggtggtgaagagtgtgtacaacctc
aacgacaagcagattgtcaaactctttagccgcatcttcaactgcaaccaggaggagatg
gtgcaagatctggaacagggggatgtgtcagagacagtgaggatgttttttgaagatagc
aaatcttttccgccggccgccaaaagtttgctcaccatccaggaagtggatgaatccctg
acccgtctggcccagttaaccaaggaggatgaccagcagaaagagcttgaagatatatcc
aaaaaatgtactgggaatgacctgaaatgtatcatcagactcattaaacacgatttgaag
atgaactctggagctaagcatgtcttggacgcagtggacccgaatgcctatgatgctttt
aaggcctcccgcaacttaggggacgtgatagagcgtgtgctaaagaaccaggtcgacgcc
tccaacggctcaggccccaggaagctcctcactattgaggcctcactcatgaccccagtg
cagcctatgttggcagaagcatgcaagtccattgagtatgccatgaagaagtgtcccaac
ggcatgtactctgaaatcaagtatgatggtgagcgtgtgcaggtgcacaagaacggggac
cacttcaactacttcagccgcagcctcaaacctgtgttgccgcacaaggtggcccatttt
aaagaatttatccctcaggcctttgttggcggccacagcatgatcttggatgccgaagta
cttctcatcgacaccaacaccagtaagccactgcccttcgggacgctgggggtgcacaag
aaagcagcctttcaagatgccaaagtgtgcttgtttgtctttgactgcgtctatttcaat
ggtgtgagcctgatggagaagccactatatgaacgaagaaagttcctccatgacaacatg
gtggaggtccccaacagaatcctgttctccgagatgaagcatgtcacaagggcctctgac
ctggctgagatgatcacaagggtcatcagagagggactcgaagggctggtcctcaaagac
ctcaaggggacctatgagccagggaagcggcactggttgaaggtaaagaaggactacctg
aatgaaggcgcaatggctgataccgcagacctggtggtgctgggagctttctatggcaaa
ggctcaaatggtgggataatgtccagtttcctaatgggctgctatgaccctgactctaag
aagtggtgcactgtaaccaagtgttctgggggctatgatgacgccatgttggctcgactc
cagaaggagctggacatgatcaaaatcagcaaggaacccagcaaaatccctggctggttg
aaaatcatcaaaaactattaccctgattttattatccgtgatccagagaaagctcctgtg
tgggagatcacaggggcagagttctcaaagtcagagatgcacactgctgacggcatctcc
atccgcttcccccgtatgacccgtgtacgtgacgacaaggactggaaaagtgccaccaac
ctaacacagctcaaggaactgttccgcatctccaaggagaggtgtgactttgaggtgaaa
gcagggccctccaaaggaggcaaaggtgacaagggctcctcagaaggagaaagcgggagt
aactcacccccctcgacctcccacagaccagtcacacccagcaagaccagcaacagcaat
actcccaaagccaaggcagtgaagactgaagctccccaacctgtcccagcaatgaagagg
aaaatgccctcagaacaacaaaatgcaaaaaaggtgaagacagaacctgtccatcacagt
aatggacaaagcaagaatggacaaatcaaaccaaacccctccaaggttgtagaagctagg
aatgaaaagactctactggacatcttcagtggggtgaaactgttcttgccagactcagtg
caggaccacaccaagctgcggcgctactttgtggccttcgatggggacctggtgccggag
tatgatgctgcctctgcaacgcacaccttgatggaacccgaagaggacagcagtgcccaa
agagtcacccctctctggatctgggagtgtatccgtaagagacgggtggttcccccctgc
tga

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