Esox lucius (northern pike): 105019248
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Entry
105019248 CDS
T04894
Name
(RefSeq) collagen alpha-1(I) chain
KO
K08131
collagen type IX alpha
Organism
els
Esox lucius (northern pike)
Pathway
els04510
Focal adhesion
els04512
ECM-receptor interaction
els04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
els00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105019248
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105019248
09142 Cell motility
04820 Cytoskeleton in muscle cells
105019248
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
els00535
]
105019248
Proteoglycans [BR:
els00535
]
Extracellular matrix (ECM) proteoglycans
Others
105019248
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105019248
NCBI-ProteinID:
XP_010883581
UniProt:
A0A3P8XZA8
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Position
LG20:complement(29923477..29937628)
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AA seq
654 aa
AA seq
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MGVPTVKVSLVSWLLAFLLCVLPSHAQEHYSGHHSGDEHTYEGSLVDSYEHSGYPHPVEY
TPEPTYSYEEENHDRYAPDPTTVTMITEEPYPYTTTTQEPYEQEPYFEESLQAPGGGEAS
HGEEGPTDCNCEPGEPGFAGFAGPKGAKGPQGKEGLPGPQGREGYKGFKGVRGRGGDTGP
EGDSGPDGEDGASGFSGAQGLPGPPGDPGETGELGLKGEIGMEGPRGGVGLPGGTGPVGD
TGPAGSAGTKGIKGSSGVEGRQGPEGAEGEKGQMGAPGFSGDHGEMGYTGYPGETGGRGE
TGPKGDQGPGGMPGSDGEPGEDGPLGVPGVIGFPGEFGQKGTKGDRGVSGPPGRIGAGGL
QGETGDAGVPGKPGPKGLQGQPGSKGETGSDGEKGGPGKTGLKGGKGDKGSFGARGDKGQ
QGGRGRIGPDGIVGRVGPHGIPGSRGEPGPVGDLGVKGGSGPKGVPGAPGPGLTDEQVLQ
LCRGVVTAQISQYASAIRAKCSQGCPVNNRTLIGPPGTRGPTGEPGKPGKAGKSGAKGAS
GLQGDIGVEGQKGADGERGTKGLKGKRGEPGNGLPGHDGHQGLRGLPGHPAEPKNGMEGP
RGARGFPGAVGQPGMAGDAGVPGFCEARDCSIHAPVMRKEQGLVKGPHNLSPKI
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccgacggtgaaggtgtctttggtctcgtggctcctcgcctttctgttgtgc
gtcctcccctcccacgcacaggaacactactctggtcaccactcaggtgatgagcacacc
tatgagggctccttggtcgacagctatgagcattcaggatacccacacccagttgaatac
acaccggagcccacttacagctatgaggaggagaaccacgaccgctatgcaccagacccc
accactgtgaccatgataacagaggaaccctatccttacaccaccactacacaggagccc
tatgaacaggagccctactttgaggagtcactccaggccccaggtggtggggaggcttct
catggggaggaggggcctacagattgtaactgtgagccaggagagccagggttcgctggg
tttgcaggacccaagggagccaaagggccgcagggtaaagagggcttacctgggcctcag
ggacgggagggctacaaaggatttaaaggtgttcgaggaagaggaggagacacagggcct
gagggtgactccgggcctgatggggaggatggtgcctctggtttctctggagctcagggc
ttgccaggtcctccaggtgatccaggtgagactggggagttagggctaaagggtgagatt
ggcatggagggaccacgtggaggagtagggcttccgggtgggactggtccagttggtgac
acgggccctgctggttctgctggaacgaaaggcatcaagggatccagtggagtagaaggc
agacagggtcctgagggagcagaaggggaaaagggtcagatgggagcccctggattctct
ggagaccatggggagatgggctatactgggtatcctggggagacgggtggcaggggagag
accggtcccaagggggaccaaggtccagggggcatgccaggcagtgatggggagcctgga
gaggatggtcctcttggagttcctggggtgattggttttcctggagagtttggacaaaag
ggcacaaaaggggatcgtggtgtgagtggacctcctggcagaattggagctgggggcctt
caaggagagacaggagatgcaggagttcccgggaagcccggccccaaaggcctgcagggc
caacccggatccaaaggggaaaccgggtccgatggtgagaagggcgggcctggaaaaaca
ggcttgaagggggggaaaggagataagggaagttttggtgctcgtggtgacaaaggacag
caagggggcagaggtcgtatcggtcctgatggaatcgttggacgagttggaccccacggt
atcccaggctccagaggagagccaggtccagttggtgacctcggtgtcaaaggtggctcg
ggaccaaaaggagtgccaggtgcccctggccccggactgacagatgagcaggtgttgcag
ttgtgtaggggagtggtgaccgcacagatctcccagtatgcctcagccatcagggccaag
tgttctcagggatgccccgttaacaaccgaacactcattggaccgccaggaaccagagga
ccaactggggaaccaggcaaacctggtaaagcaggcaaatctggggccaaaggagccagt
ggcctccagggagacattggcgtggaggggcaaaaaggggcagatggtgaaagaggaacg
aagggtctgaaaggaaagaggggtgagcctggtaatggtctccctggacatgatggacac
caaggcctcagagggttgccaggtcacccagcagagccaaagaatggtatggagggtcct
agaggagcacgtgggttccctggcgctgtgggccagcctggcatggcgggagatgctgga
gtgcctggcttctgcgaggcacgggactgcagcattcacgcaccagtgatgcgcaaggag
cagggcctggtgaagggaccccacaatctaagccccaagatctaa
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