KEGG   Esox lucius (northern pike): 105028329Help
Entry
105028329         CDS       T04894                                 

Gene name
hdac6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
els  Esox lucius (northern pike)
Brite
KEGG Orthology (KO) [BR:els00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:els01009]
    105028329 (hdac6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:els03019]
    105028329 (hdac6)
   04131 Membrane trafficking [BR:els04131]
    105028329 (hdac6)
   03036 Chromosome and associated proteins [BR:els03036]
    105028329 (hdac6)
Enzymes [BR:els01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     105028329 (hdac6)
Protein phosphatases and associated proteins [BR:els01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     105028329 (hdac6)
Messenger RNA biogenesis [BR:els03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     105028329 (hdac6)
Membrane trafficking [BR:els04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    105028329 (hdac6)
Chromosome and associated proteins [BR:els03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     105028329 (hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 105028329
NCBI-ProteinID: XP_012991695
LinkDB All DBs
AA seq 1118 aa AA seqDB search
MDSVPAASEPRTQSRVSPDNNTARSSKATRKKTNNLQETRRRGRMDRSKGQEDIANHMMN
LDLGHKGPATGTGLVFSDIFSRYHCLWDPSHPECPQRVTSVMDMVEQQGLQSRCVLVEAQ
PATEEQLLLVHTKEYVDLMRSTQQMNEDQLKALSDTYNSVYIHPESYTCACYAVGSVLQL
VDKLMTSDLRNGFSVARPPGHHAHSEKMNGYCMFNNLAIAARYAQTHHQVARVLVVDWDV
HHGQGIQYIFQEDPSVLYFSVHRYEEGLFWPHLAESDSNSVGSGPGEGYNINLPWNQVGM
TDADYITAFQQLLLPVAYEFQPQLVLVAAGFDCMTGDPKGEMSATAQGLSVLTHMLMGLA
QGKVLLALEGGYNLQSTAEGVCACLRTLLGESCPRLRSPSGPSDGALRSISRSISALYPY
WTSLQVLEGGPLSCIDTLKKMKDTSTLTTAEEMKDTSTLTTGLVYDQRMMEHHNMWDSHH
PELPQRIQRIFSLHESLGLVSRCLMLPARLATEEELALCHSSKHIAQIKATEVMKPRDLH
RLGNEYNSIFISAESYRSARLAVGACFNMAQAVLNGRVRNGAAVVRPPGHHAEKDAACGF
CFFNSAALTARYAQSISQKPLRVLILDWDVHHGNGTQHIFEEDDSVLYVSLHRYEDGTFF
PSSEDADYSRVGLGRGAGFNVNIPWNGAKMGDAEYLAAFHSVVMPVAREFDPGLVLVSAG
FDAARGDPLGGYQVTPEGYANLTHLLLGLAGGRVLVILEGGYNLTSISESMSACTSVLLG
DPPPPLPCRSPPHPNAAVSINNVIRTHAPYWRSLRIQLPESLRLSLPSPKHRGKRTSKGK
GKKSPRQGDGGGASPGQVTSLPHAESPKTTRLSTGGQGNCDLDDLTKGLVSLDLNQTASP
NPSPASVAVGGARQKLRPGPLESPVKGLNKEATTVGNTPEILHPTPDRPKTQAVTMVISD
SVAKGDQESVDQENGSPETEFQGASGYTEKPVFELFCGGQDVDGGTLYVVDPLSWCPHLD
AVKPVPAGGMDVFLPCEDCGSDAENWICLTCYKVFCGRYVNQHMVTHGLVSEHPVVLSFA
DLSVWCYSCEAYVHNQAVFEAKDTAHRVKFGEDMPFST
NT seq 3357 nt NT seq  +upstreamnt  +downstreamnt
atggattcggtgccggcggcttcggaacccagaacccagagccgcgtgtccccggacaac
aacaccgccagaagcagcaaggcaacccgcaagaaaaccaacaatctgcaggagactcgg
agaagaggaagaatggatcggagcaaaggacaggaggacattgccaatcatatgatgaat
ctggatttaggccacaagggtccagccactgggaccggtctggtgttcagcgacatcttc
agccgctatcactgcctctgggaccccagccacccagaatgtccccagcgggtgacctcc
gtcatggacatggtggagcaacaaggactgcagtcccgctgtgttttggtggaggctcaa
cctgctacggaggaacagctgctgttagttcacacgaaggagtatgtagacttgatgagg
tctactcagcagatgaatgaagaccagctgaaggctctgtctgacacctataactcagtc
tacatccaccctgagtcctacacatgtgcctgttacgccgtgggctccgttctacagttg
gttgataagctcatgacctcagacctccggaacggattctctgttgctaggcctccagga
caccacgcccattcagaaaagatgaatggttactgcatgttcaacaacctggccatcgca
gcgcgctacgcacagacacaccaccaggtggcgcgagttcttgttgtggactgggacgtg
catcacggccaaggcatccagtacattttccaggaggatcccagcgtgctgtacttctca
gttcacagatatgaagagggtttgttctggccccatctggcggagtcggatagcaattca
gtgggcagtggtccaggagagggttacaacatcaacctgccctggaaccaggttggaatg
accgatgcggactacattaccgcattccaacagcttcttcttcctgtagcctatgagttc
cagcctcagctggtcctggtggccgctggctttgactgcatgacaggtgatcccaagggg
gagatgtccgccactgcccagggtttgtctgtgttgactcacatgttgatgggcctggcc
caggggaaggttctgctggctctggagggagggtacaacctccagtcaacagcagagggt
gtgtgcgcctgtctccggaccctgctgggagagtcctgccctcgtttgaggtccccatcc
ggccctagtgacggtgccctgaggtccatttccaggtccatatctgctctgtatccctac
tggaccagcctacaggtcctggagggagggcctctgtcttgcattgacacactcaagaag
atgaaggacacctccaccctgacaacagcagaggagatgaaggacacctccaccctgaca
acaggtctggtttacgaccaaaggatgatggagcatcacaacatgtgggacagccatcac
ccagagcttcctcagaggatccagcgaatcttttcgcttcatgagagcctgggcttggtg
tcccgttgcctgatgttgcctgctcgtttggccacggaggaggagctggccctgtgccac
agctcgaaacacatcgcccagatcaaggccaccgaggtgatgaagcccagagacctccac
cggctgggcaatgagtacaactccatcttcatcagtgctgagagctacaggagcgccagg
ctggcagtgggagcctgcttcaacatggcccaggctgttctgaatggacgggtccgtaat
ggcgctgctgtcgtacgtccccctggtcatcatgcggagaaggacgccgcctgtggattc
tgtttcttcaacagcgccgccctcaccgcccgctacgcccagtccatctcccagaaacca
ctgcgggtcctcatcctcgactgggatgttcaccatggcaacggaactcagcacattttt
gaggaggacgatagtgtgctctacgtgtccctgcatcgctatgaggacgggaccttcttc
ccctcctctgaggatgcagactacagcagagtgggcctggggaggggggctgggttcaac
gtcaacatcccctggaacggagcaaagatgggcgacgcagagtatctcgctgccttccac
tccgtggtcatgcccgtcgctagagagtttgacccaggcctggtgttggtatcggcaggc
tttgatgccgccagaggagaccccctgggaggataccaggtgacgcccgagggctatgcc
aacctcacccacctcctgctggggctggcaggcggcagagtcctggtgatcctggaggga
ggctacaacctcacgtccatttctgagtccatgtcagcctgcaccagtgtcctcctggga
gacccccccccgcccctgccctgccggtctcccccacaccccaacgcagcagttagcatc
aacaatgtcatacgaacccacgccccctactggaggtccctcagaatacagcttccagag
tctctacgcctgtcgctgccctcccccaaacatagagggaaaaggacttctaaaggcaaa
ggaaagaaatcccccaggcagggggatgggggcggggccagtcctggtcaggtgaccagc
ctgccacacgcagagtcacctaagacaacacgtctgtccacgggtgggcagggcaactgt
gacctggatgacctcactaaaggactggtttcactcgacctcaaccaaaccgcctcaccc
aatcccagcccagcgtcagtcgctgtgggaggggctagacagaagctacgccccggccct
ctggagagtcctgttaaggggctgaacaaagaagcaacaactgttgggaacaccccggag
atccttcacccgactcctgacaggccgaaaacgcaggctgtcaccatggtaatctcagac
tccgttgccaagggagaccaggagagcgtggaccaggagaacggttccccggagacggag
tttcaaggggcgtctgggtacaccgagaagccggtgtttgagctgttctgtggaggccag
gatgtggacgggggcaccctgtacgtggtcgacccgctgtcctggtgtcctcatctggac
gcggtgaagcccgttcctgccggagggatggacgtcttcctgccctgtgaggactgtggg
tctgacgctgagaactggatctgtctcacctgctacaaggtgttctgtggtcgctatgtc
aaccagcacatggtgacccatggcttggtgtcagaacatcctgtggtactgagcttcgcc
gacctgtcagtctggtgctactcctgtgaggcctacgtgcacaaccaggcggtgtttgag
gccaaggacactgctcaccgtgtgaagttcggcgaggacatgcccttctccacctaa

DBGET integrated database retrieval system