KEGG   PATHWAY: emr00020
Entry
emr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ehrlichia muris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
emr00020  Citrate cycle (TCA cycle)
emr00020

Module
emr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:emr00020]
emr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:emr00020]
emr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:emr00020]
emr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:emr00020]
Other DBs
GO: 0006099
Organism
Ehrlichia muris [GN:emr]
Gene
EMUR_00290  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
EMUR_04210  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EMUR_04520  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EMUR_01300  sucA; MFS transporter [KO:K00164] [EC:1.2.4.2]
EMUR_04345  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
EMUR_00665  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EMUR_02730  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EMUR_00710  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
EMUR_00715  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EMUR_03615  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
EMUR_03610  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EMUR_00935  succinate dehydrogenase [KO:K00241]
EMUR_00940  succinate dehydrogenase [KO:K00242]
EMUR_03345  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EMUR_02160  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EMUR_03990  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
EMUR_00425  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
EMUR_00270  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
emr00010  Glycolysis / Gluconeogenesis
emr00061  Fatty acid biosynthesis
emr00071  Fatty acid degradation
emr00190  Oxidative phosphorylation
emr00220  Arginine biosynthesis
emr00250  Alanine, aspartate and glutamate metabolism
emr00280  Valine, leucine and isoleucine degradation
emr00470  D-Amino acid metabolism
emr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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