Euhalothece natronophila: FRE64_06180
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Entry
FRE64_06180 CDS
T06117
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
enn
Euhalothece natronophila
Pathway
enn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRE64_06180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enn03019
]
FRE64_06180
03016 Transfer RNA biogenesis [BR:
enn03016
]
FRE64_06180
Enzymes [BR:
enn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FRE64_06180
Messenger RNA biogenesis [BR:
enn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FRE64_06180
Transfer RNA biogenesis [BR:
enn03016
]
Prokaryotic type
tRNA degradation factors
FRE64_06180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
QDZ39552
UniProt:
A0A5B8NJY1
LinkDB
All DBs
Position
complement(1303136..1305382)
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AA seq
748 aa
AA seq
DB search
MEFSIATILSHLSDNKLVAPKVLEKKLNLQEESSIQKLQIALDALERVGVIVKERGKYRR
VPQDDVVEAKLRCSSKGFCFAIQDQEGTDDIYVRESYLGSAWNGDRVLVKVIKDGSRRRS
PEGEVQVILDRANPSLLAQVRKVEDNSEKDYQAVPLDDRLLFELDLSPDGQDLESAVDHL
VHLEVLRYPLGDHPPVGRVTKILGSDAEEAADTDIVCCKHDLPRQFSATALKEAKALTPT
LDEKTLQKRVDYRDLFTVTLEETSENTDSLIENALTLNKTKEGNWELGIHIADIAHYVPK
DSAMDTAAKQRGTAVFLNDFVIPLFPPEVQQCASLIPGEDRLAVSILLTLNSMGEIEGFE
IQESVIRVDEQVSYQQAQSLLGTDNNTATAELLNDLFFNLSPVVKSQRVQRGGFEIELPE
AQGGFKDEGRLGTVVATSSLPVRALLTELMILAGQAVGQHLQALGVPGIYRVQHISDYTE
IEDLMKLGNNLGLTLELENEDELRPQDYQNFSQQIANSDASRVLMFFLKSTLKLAKYSTK
PSEHFGLALNRPYSPCISPGRRYADLWNQRILKSVFHEGRDRRVRTQKEGVDLHSNTSHG
KINWKVLPPAMATEYEEEIASFIHHLNERDKMVEDAENDLKGLNKAEKMKERTGEVFSGL
ITGVQSYGFFVEIEDLLVEGLVHVSSLKDDWYEYRARHACLVGRKNRIAYRLGSRVKVQV
KSVDYYRQQIDLVTVSGATPATDEDLDS
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacaattctttcccacttaagtgataataaactagtcgcccca
aaagttctcgaaaaaaaactaaacttgcaagaggagtcaagtattcaaaaactacaaatt
gcccttgatgccctcgaacgagttggagtgattgtcaaagaaaggggaaagtaccgtcgt
gttccacaagatgatgtggtggaagcgaaattgcgttgttcgagtaaaggtttttgtttc
gctattcaagatcaggaaggaacagatgatatttatgtacgagaatcctatcttggtagt
gcttggaacggcgatcgcgttttagtgaaagtgattaaagatggaagccgtcgccgctct
cctgaaggagaagtgcaagtaattctcgatcgcgcaaatccctctctccttgcccaagtc
agaaaggtagaagacaacagcgaaaaagactatcaagcggttccccttgatgatcggtta
ttgtttgaactggatcttagccccgacggacaagacttagaaagtgctgtagatcattta
gttcacctggaagtcttacgatatcctcttggggatcatcctcctgtaggtcgcgtcacg
aaaattttaggcagtgatgcagaagaagctgcagatacagatattgtctgttgtaaacat
gatcttcccagacagttttccgcaacagccctcaaagaagcaaaagccttaactcccacc
ctcgatgaaaagactttacaaaagcgagttgattatcgagatttattcaccgttactctt
gaagaaacctcagaaaacaccgattccttgattgaaaatgcccttaccttaaacaaaacg
aaggagggaaactgggaattaggaattcatattgctgatattgcccattatgttcctaaa
gattccgcaatggacaccgctgccaaacaacggggaacagcggtctttttaaatgatttt
gttattcctttatttcccccagaagtgcaacaatgtgcttctttaatcccaggggaagat
cgtcttgcggtaagtatcttgttaaccctcaattccatgggagagatagaagggtttgaa
attcaagaaagtgtaattcgtgtggatgaacaagttagctatcaacaagcccaatctctt
ctcggaactgataacaacaccgctactgcagaacttctcaatgacttattctttaatttg
agtccagttgtgaaatcgcaacgggtacaacggggaggttttgaaattgaattacccgaa
gcccaaggaggatttaaagatgaaggacgcttaggtacagtagttgcaacttcttccctt
cctgtacgggctttattaacagaattaatgattttggcaggacaagcagtgggacagcat
ttacaagcccttggtgtacctggaatttatcgagtacaacatatttctgattacactgaa
attgaagacttaatgaaattgggaaataacttggggttaactctcgaattagaaaatgag
gatgaactgcgccctcaagattaccaaaactttagccaacaaattgccaactccgatgct
tctcgggtattgatgtttttcctcaagtccactctcaaactagccaaatatagcaccaaa
cccagtgaacattttggtttagccttgaatcgcccttacagcccttgtatttctccagga
agacgttatgctgacttgtggaaccaacggattttaaaatctgtgtttcacgaagggcgc
gatcggcgagtgagaacccaaaaagaaggggttgatctccacagtaataccagtcatggc
aaaattaactggaaagtacttcctcctgctatggctacagaatacgaagaagaaattgct
agctttattcatcatctcaatgaacgagacaagatggtagaagatgcagaaaacgacttg
aaagggcttaataaagccgaaaaaatgaaggaacgcacaggagaagtcttttctggttta
attacaggcgtacaatcctatggctttttcgtagaaattgaagacttattagtggaagga
ttagttcatgttagttctcttaaagatgattggtatgaatatcgcgcccgtcatgcttgt
ttagtgggacgtaaaaataggattgcctatcgactgggatcacgggtaaaagtacaagta
aaaagtgttgactattatcgtcagcaaattgatcttgttaccgtttctggggcaactcca
gctactgatgaagatttagatagttaa
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