Exaiptasia pallida: 110254613
Entry
110254613 CDS
T05080
Definition
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
epa
Exaiptasia pallida
Pathway
epa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
epa00001
]
Genetic Information Processing
Replication and repair
03450 Non-homologous end-joining
110254613
Enzymes [BR:
epa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110254613
DNA repair and recombination proteins [BR:
epa03400
]
Eukaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110254613
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
DNA_ligase_IV
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
PTCB-BRCT
Other DBs
NCBI-GeneID:
110254613
NCBI-ProteinID:
XP_020917283
LinkDB
Position
Unknown
AA seq
924 aa
MAASSGGSCVAAEVPFRDLCGLLEKISSTSGTEKKRNLLSKFIDAWRGAHTKIHGDSKTT
DSLYPAIRLLLPQLDKDRSAYGMKEVVLAKYYIEILSISKDSVDGRKLLNYRNPGATKQG
LATDFASVAYFVLRSRCPTQGSLNVEQVNKYLDDIAQANLVKKRDEIKKTLQILLRNTNA
IEQKWLIRIILRDLKTGLSENSVLGVFHPDALELYNICNSLMKVCQDLHDRSIRMNEVEI
TLFSPFRPMLGQRGSLDEIEKLMEHQTFYIEEKVDGERMQLHKDGNNYKYYSRSANEYTH
VFGANSKDGYLTPHIADYFDSSTKSCILDGEMVVFDTENDVFLTKATNLDVKSDSTYNKG
HHPCFIVFDILLLNGKKLANVPLMERLSSLTKVFKSRPGYIQCVDRKSATTKAEVLSALN
DAIDRREEGLVIKSPNSVYKPNVRNGSGWLKIKPEYVDSLSEDLDVLIMGGYFGVGRRSG
MVSHFLCGVAVPPDHRGQHPNQFYSFCKVGTGYTLNELKELGQKLKPHWQPFKTNKPPTS
IILASGFKEKPDVWIEPSKSVIVQVKATEIIASERFKAGVTLRFPRLECVRDDKKWYDCL
DVKELHKLRTIAQGKLTHQHTNPDDTSQQPSRKKRRVAPRIEQPRAVAAQFRPADVSSVI
EVSKLFDGKEFCVINGPSTHSKSILEKKIVEHGGTFTQNPGPETFCVVADRLNLRVNNII
KDAKYDVVKACWLVDCLDRKTLLPWLPSHMFHSSPSTEKQFAMEYDCYGDSFTQDATVDS
LKKAFNDFDKDDTAPNHAITLDEIAEIEQRYYPGDSPLGLFRPCRVYLDQYKNIDDSTTG
IKDCSLEVTALELRMYGASISKEFDENVTHVVVDIRDLSRXHQLRTKMRSRHQKHHIVSQ
DWVSQSIEQQKLQQELLHSVQLDT
NT seq
2775 nt
+upstream
nt +downstream
nt
atggcggcttccagtggaggtagttgtgttgctgctgaagttcccttccgtgacttgtgc
gggttgttggagaaaatatccagcacaagtggaacagaaaagaaaagaaatttattgagt
aaattcattgacgcttggagaggagcgcataccaaaattcatggtgattcaaaaacgaca
gactccctatatccagcaataagactactactgcctcaacttgataaggacagatcagca
tatggaatgaaagaggttgttcttgcaaagtattatattgaaatactcagcataagcaaa
gacagtgttgatggccggaaactactgaattatcgcaatcctggagcaacaaagcagggt
ttggctactgactttgccagtgtagcatattttgttcttagaagtagatgtccaacccaa
ggaagtttaaatgttgagcaagtcaacaagtaccttgatgatattgcacaagcaaatttg
gtcaagaaaagagatgaaattaaaaaaactttgcaaattttgctaagaaataccaacgct
attgaacagaaatggcttatcaggatcattctaagagatcttaaaactggtttaagtgag
aactcagtccttggtgtgtttcatcctgatgctcttgagctgtacaatatttgtaacagt
ctaatgaaggtttgtcaagaccttcatgatcgttccatcaggatgaatgaagttgaaatt
acacttttctcaccatttcgaccaatgctaggtcagagaggctcattggatgagattgag
aagctgatggagcaccaaactttctatatcgaagagaaagttgacggagagcgaatgcag
cttcataaagatggcaacaactacaaatattactccagaagtgctaatgagtacactcac
gtatttggtgcaaactctaaagatggttacctaactcctcacattgctgactactttgac
agttcaaccaagtcatgtattctagatggggagatggttgtttttgacactgaaaatgat
gtgtttttaaccaaagcaacaaatctggatgtcaaatcagactcaacatataacaaaggt
catcacccatgtttcattgtgtttgacattctccttctgaatggaaaaaagctggcaaat
gtgccgttaatggaaagactgtcatcactgaccaaggtgttcaagtctcgaccaggttat
atccagtgcgttgacaggaaaagtgctaccacaaaagctgaagtacttagtgctcttaat
gacgctattgatcgacgtgaggagggtttagtcatcaaatcaccaaactctgtttacaaa
cctaatgtcagaaatggaagtggttggttgaaaatcaagccagagtatgtggatagcttg
agtgaagatcttgatgttcttataatgggtggttattttggagttgggcgtcgaagtggt
atggtatctcatttcctgtgtggtgtggctgtcccaccggaccatcgaggtcaacatcca
aaccagttttattcattctgtaaggttggtactgggtacacgctaaatgaactgaaagaa
cttggtcaaaagttaaaaccacattggcagccgtttaagaccaacaaaccaccaacaagt
ataatactggcatctggattcaaagaaaagccagatgtatggattgagccgtccaagtca
gtgattgtacaggtcaaagccactgaaatcattgcttcagaaaggttcaaggcaggagtg
actttgaggtttccaaggttggaatgtgtgcgagatgataaaaaatggtatgactgcctg
gacgtaaaagaactacacaagttacgaacaatagctcaaggaaagcttacacatcaacac
acaaaccccgatgacacatcccaacaaccttcacgtaagaaaagacgcgtggccccgcgc
attgaacaacctcgcgctgttgcggcgcagtttcgacctgcagacgtgtcttctgttata
gaggtatcaaaactttttgatggcaaggagttctgtgttataaacggaccatctactcac
tcaaaatccattcttgagaagaaaattgttgagcatggagggacattcacacagaatcct
ggtcccgagacattttgtgttgtggcagataggctcaacttacgggtcaataatatcatc
aaagatgctaaatacgatgttgttaaggcttgttggctggtagattgcctggatcgaaaa
acgctgttaccttggttacctagtcacatgttccattcctcgccatccaccgagaagcag
tttgctatggaatacgattgctatggtgacagctttacacaagatgcaacggtggattcc
ttgaaaaaagcctttaatgactttgataaagatgataccgccccaaaccatgccatcact
cttgacgagattgccgagatagaacaacgttattatccaggcgattctccccttggttta
tttagaccatgtcgtgtatatttggatcaatataaaaacatagatgacagcaccacgggc
atcaaggactgtagtttagaggtaacagcacttgaactgcgcatgtacggcgcatcaata
agtaaagaatttgacgaaaatgtcactcatgtggtcgtagacataagagatctctctcga
akccatcaactgcgtactaagatgaggagtcgccatcaaaaacaccatatcgtcagccaa
gactgggtatctcaaagtattgaacaacagaagttacaacaagaactccttcactctgta
caattggatacatag
DBGET
integrated database retrieval system
