Agathobacter rectalis M104/1: ERE_09250
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Entry
ERE_09250 CDS
T02588
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
era
Agathobacter rectalis M104/1
Pathway
era03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
era00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ERE_09250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
era03400
]
ERE_09250
DNA repair and recombination proteins [BR:
era03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ERE_09250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ERE_09250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
UB2H
EAD9
Microtub_bd
DUF1811
MscS_porin
DUF87
Focal_AT
Motif
Other DBs
NCBI-ProteinID:
CBK92970
LinkDB
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Position
complement(944164..946146)
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AA seq
660 aa
AA seq
DB search
MEFKLHSKYKPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAALNKPTLI
ISHNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSVNDEIDKL
RLSATAALTERKDVIVVASVSCIYGLGSPDEWTGMSISLRPGQERDRDDLARSLIDLQYT
RNDMDFHRGTFRVHGDVLDIFPANADDTAIRVEFFGDEIDRIVEVDVLTGEVKCSLEHTM
IFPASHYVVSQEKINEACLNIEKELDERVKYFKGEDKLIEAQRIAERTNFDIEMMRETGF
CSGIENYTRHLNFAKPGEPPMTLIDFFPDDFLIIVDESHITIPQIGGMYAGDRSRKTTLV
DYGFRLPSALDNRPLNFEEFEGKIDQMLFVSATPNKYENEHELLRAEQIIRPTGLLDPEI
SVRPVEGQIDDLVSEVNKETANHHKVLITTLTKRMAEDLTNYMAELGIRVKYLHSDIDTL
ERAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAA
RNSEGHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLIAISKKV
AADENALDKDPESMSKKELEKHIADIEKKMKKAAAELNFEAAAEYRDKLIMLKNTLRDVK
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaaactgcattcaaaatacaagccgaccggcgaccagccgcaggcaatagag
cagcttgtgaagggatttaaggagggcaaccagtttgagaccttacttggagttaccggc
tccggcaagacctttaccatggccaatgtcattgcagcactcaataagcctacacttatc
atatcgcacaataagacactggcggggcagctctatggtgagatgaaggagtttttcccc
gaaaatgcagtagagtactttgtatcctactacgactattaccagcctgaggcctatgtg
ccgcagtctgatacgtacatagccaaggattcctctgtaaatgatgagatagataagctc
aggctttcagccacggcagcactcacggagcgaaaggacgtcattgtcgtggcatcggtt
tcctgcatatacggacttggaagtcctgatgagtggacaggcatgagtatttcgctgcgc
ccggggcaggagagggacagggatgatctcgcgaggtctctcatagatttacagtacacc
aggaatgatatggattttcaccgaggcaccttcagagtgcacggtgatgtgcttgatata
tttccggcaaatgccgatgatacggcaatcagggttgagtttttcggtgatgagatagat
cggatagtggaggttgatgtgctgaccggcgaggtaaagtgctcgcttgagcacacgatg
attttccctgcatcccactatgtagtttcgcaggagaagataaatgaggcctgcctcaat
atagagaaagagcttgatgagcgtgtgaagtattttaaaggcgaggacaagctcatagag
gctcagcgaatagcagagaggaccaattttgacatagagatgatgagggagacaggcttc
tgctcaggaattgagaactatacgaggcatctgaactttgcaaagccgggggagcctcct
atgacactcatagatttcttcccggatgattttctcataattgtggatgagtcacatatc
acgattccacagataggcggtatgtatgcgggggaccgctccagaaagaccactcttgtg
gactatggcttcagactgccctcggcccttgacaacagacctctcaatttcgaggagttc
gagggtaaaatagaccagatgctctttgtctcagccactccgaataagtatgagaatgag
catgagctgcttcgtgcggagcagattatcagaccgacgggacttttggatcctgagata
tcagtgcgccctgttgagggacagattgatgaccttgtgtcagaggtcaataaggagact
gcaaaccatcacaaggtgcttatcaccacactcacaaagcgtatggctgaggatctaaca
aactatatggcagagcttggcatcagggtaaagtacctgcattcagatatagatacactt
gagagagcggagataatacgtgacctgcgtcttgacgtatttgacgtgctcgtcggcatc
aatctgctcagggaggggcttgatatcccggagattacacttgttgccatactcgatgcg
gataaggaaggcttccttcgctcagagacctcacttatacagacgataggacgtgccgca
cgtaacagtgagggccatgttatcatgtacgctgacaagattacagactccatgcgtgtc
gcaattgacgagacaaagcgtcgtagaaaggtacaggaagagtacaatgaggctcacggc
atcacaccacagactatacagaaatccgtgcgtgatctcatagctatctcaaagaaggta
gcggccgatgagaatgctcttgacaaagatccggagtcaatgagcaaaaaagagcttgag
aagcatattgcagatatagagaaaaagatgaaaaaagcagcggcagagctcaatttcgag
gctgctgcagagtacagggataagcttattatgcttaaaaacacattgagagacgtaaaa
taa
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