Agathobacter rectalis DSM 17629: EUR_17950
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Entry
EUR_17950 CDS
T02587
Name
(GenBank) conserved hypothetical protein YmdA/YtgF
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ert
Agathobacter rectalis DSM 17629
Pathway
ert03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ert00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUR_17950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ert03019
]
EUR_17950
Messenger RNA biogenesis [BR:
ert03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EUR_17950
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
NtrY_N
KhpA-B_KH
GKRP-like_C
NfeD
Motif
Other DBs
NCBI-ProteinID:
CBK90842
LinkDB
All DBs
Position
complement(1812361..1813908)
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AA seq
515 aa
AA seq
DB search
MLPYIITAVVSVIITALIVWFAAALYQKKSANSKIGNAEEKARGIIDEAVKTAEEKKRES
MLEIKEESIKAKNDLDKEIKERRNEISRNERRIVQKEENVDKKLEAIEKREAGFAVKEEE
LKKQKIEISKLNEQRLQELERISGLTSEQAKEYLLKTIEEDVKLDTAKMIKEMENKAKEE
ANRKAKDYVVTAIQKCAADHVSETTISVVSLPNDEMKGRIIGREGRNIRTLETMTGVDLI
IDDTPEAVILSSFDPIRREVARIALEKLIVDGRIHPARIEEMVEKAQKEVDNMIREEGEA
ATLEVGIHGIHPELVRLLGKMKFRTSYGQNALKHSIEVAQLTGLLAAEIGEDVRMAKRAG
LLHDIGKAVDHEMEGSHIQLGAELCKKYKESPLVINAVESHHGDVEPESLIACLVQAADT
ISAARPGARRETLETYSNRLQQLEDITNGYKGVEKSFAIQAGREIRIMVVPEQVSDADMV
IMARDISKQIESELEYPGQIKVNVIRESRIVDYAK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgctaccgtatatcattactgctgtagtttctgttattattactgcattgattgtatgg
tttgcagccgctttatatcagaagaaatctgctaactccaagataggaaatgctgaggag
aaggcaagaggaatcattgatgaggctgtaaagactgcggaggaaaagaagcgcgagtct
atgcttgagatcaaggaagagtctattaaggctaagaatgatctggataaggaaatcaaa
gagcgtagaaacgagatttcccgtaatgagcgtcgtatcgttcagaaggaagaaaatgtc
gacaagaagcttgaagctatcgagaagcgtgaagccggatttgcagttaaggaagaggaa
ctcaagaagcagaagattgaaatatcaaagcttaacgagcagcgtttacaggaacttgaa
agaatctctggattaacctccgagcaagctaaagaatatctcttaaagaccattgaagaa
gatgtaaaacttgatactgcaaaaatgattaaggaaatggaaaacaaagcaaaggaagag
gcaaaccgtaaggctaaggattacgtggttacagctattcagaaatgtgcagcagaccat
gtgtctgagactactatttcagtagtatcgcttccgaatgatgagatgaagggacgtatc
ataggaagagagggacgtaatatccgtactctcgagactatgacaggtgtagatctgatt
atagatgacacacctgaggcagttatcttgtcaagctttgatccaattagaagagaggtt
gcaagaatagctcttgagaagcttattgttgacggaagaatccatccggcccgtatagag
gagatggttgagaaggctcagaaagaagtcgataatatgattcgtgaagagggtgaggct
gccacacttgaggtgggcatacatggtattcacccggagcttgtgcgtcttcttggaaag
atgaagtttagaacaagctacggtcagaatgcgttaaagcattctatcgaggttgcacag
ctgactggcttactggctgctgaaattggtgaggatgtcagaatggcaaagcgtgcaggc
ttattacatgatataggtaaggcagtagatcacgagatggagggttcacatatccagctc
ggtgccgaattatgtaagaaatacaaagagtcaccacttgtgattaatgcagtagaatca
catcacggtgatgttgaaccggagtcacttattgcatgtctcgtgcaggcagctgataca
atcagtgcggcacgtccgggtgcaagaagagagactttggagacatattcaaatcgtctt
cagcagttagaggacattacaaatggttataaaggggtagagaaatcttttgctattcag
gcaggtagagagattcgtattatggtagttcctgagcaggtcagcgacgccgacatggtt
atcatggccagagacatatctaagcagattgagtctgagctagagtatccgggtcagata
aaggttaatgtaatacgtgagtcacgtatagtggattacgcaaagtag
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integrated database retrieval system
