Enterobacter sichuanensis: C1N69_08815
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Entry
C1N69_08815 CDS
T06532
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
esh
Enterobacter sichuanensis
Pathway
esh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
esh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1N69_08815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
esh03400
]
C1N69_08815
Enzymes [BR:
esh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1N69_08815
DNA repair and recombination proteins [BR:
esh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1N69_08815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFQ08788
LinkDB
All DBs
Position
complement(1829475..1832921)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR
QFTDNLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPSLFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRVQLKTDSLADKAANTNLAFQALPD
LAVQAQQKSPLENLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLRFTQELTERKTRMDWVRNFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgttattccttacctgtcaaagcgggcgaccagcgccagctgggt
gaactcacgggcgcggcgtgcgccacgctggtggcagaaattgctgagcgccatcctggc
ccggtgatcctggttgccccggatatgcaaaacgccctgcgcctgcacgacgaaattcgc
cagttcaccgataacctggtgttcagcctggccgactgggaaacgctgccgtatgacagc
ttctctccgcatcaggagatcatctcctcgcgcctgtcgacgctctatcagctgcctacc
atgcagcgcggtgtgctgattgtgccggtgaacaccctgatgcagcgcgtctgcccgcac
agctatctgcatggtcatgcgctggtgatgaaaaaaggccagcgcctgtcccgtgacgcc
ctgcgcgcgcagcttgacggcgccggttatcgccacgtcgatcaggtgatggagcacggg
gaatacgcgacccgcggcgcgttgctggacctgtatccgatgggcagcgaccagccgtat
cgtctcgacttcttcgatgatgaaatcgacagtctgcgggtattcgacgccgacacccag
cgcacgctggaggaggtcgagtccattaatttattgcccgcgcatgagttcccgacggac
aaaaccgccatcgaactgttccgtagccagtggcgcgataaattcgaggtgaagcgtgac
gccgaacacatttaccagcaggtcagcaaaggcacgttgcctgccggcatcgaatactgg
cagccgctgttctttaacgagccgctgccgtccctgttcagctacttcccggcgaatacg
ctgattgtgaacaccggcgatatcgatgccagcgccagccgctttgaaagcgaaacccgc
gcccgctttgaaaaccgcggcgttgacccgatgcgcccgcttctgccgccggaagcgctc
tggctgcgtactgatgagctcaacgccgagctgaagcgctggccgcgagtgcagctaaag
accgactcgcttgctgataaggccgccaacaccaacctcgccttccaggcgctgccggat
ctggccgttcaggcccagcagaaatctccgctggaaaatctgcgcaagttcctggaatcc
tttaccggcccggtggtgttctccgttgagagtgagggccgccgtgaagcactcggtgag
ctgctggggcgcattaaagtggcgccaaagcgcatcctgcgtctgagcgaggcgaccgga
aatggtcgttacctgatgatcggcgccgccgagcatggatttattgatacgctcaacaac
ctggcactgatttgcgaaagcgacctgctgggcgaacgcgtcgcgcgtcgccgccaggac
agccgtcggaccatcaatccggacacgctgatccgcaacctggccgagctgcatccgggc
cagccgattgttcaccttgaacacggcgtgggtcgttaccagggaatgacgacgctggaa
gcgggcggtatcaaaggtgaatacctgatgctgacctacgctaacgacgccaaactgtat
gtcccggtctcttccctgcatctgatcagccgctatgcggggggcgccgaggagaatgcg
ccgctgcataagctgggcggtgacgcctgggcgcgcgcgcgccagaaagcggcggaaaaa
gtacgcgatgtggcagccgagttgctggacatctacgcgcaacgcgcggccaaagagggc
ttcgcctttaagcatgataaagagcagtatcagctgttctgcgacagtttcccgtttgaa
accacgccggatcaggctcaggccattaacgccgtgctgagcgatatgtgtcagccgctg
gcaatggatcggctggtgtgcggcgacgtcggtttcggtaaaaccgaagtggcaatgcgt
gccgccttccttgcggtcgaaaataacaagcaggtggcggtactggtgccaaccaccctg
cttgcccaacagcactttgacaacttccgcgaccgcttcgccaactggccggtacgcatc
gagatgctgtcgcgttttcgcagtaccaaagagcaaacgcaaattctggaacaggcaagc
gagggtaagatcgacattctgattggcacccacaagctgctgcaaagcgacgtgaagtgg
aaagatctggggctgctgattgtcgacgaagagcaccgcttcggggtgcgtcataaagag
cggatcaaggcgatgcgcgccgacgtcgatatcctgaccctgaccgcgacgcctattcca
cgtacgctcaatatggcgatgagcggcatgcgcgatctgtcgattatcgccacgccgcct
gcgcgccgtctggcggtaaaaacctttgtccgtgagtacgataatctggtggtacgtgag
gccattctgcgtgaagtgctgcgcgggggacaggtctactacctctacaacgacgtggaa
aatatccagaaagcggcagaccggctggcggagctggtaccggaagcgcgcattgccatc
ggtcacgggcagatgcgcgagcgcgagctggagcgggtgatgaacgacttccaccaccag
cgctttaacgtgctggtgtgtaccaccatcattgaaaccgggatcgacattccgacagca
aacacgattattatcgagcgcgcggatcacttcggtctggcgcagctccaccagctgcgc
ggccgcgtcggacgttcgcaccatcaggcctacgcctggctgttgacgccgcacccgaaa
gcgatgaccaccgacgcgcaaaagcgcctggaagccatcgcctcgctggaagaccttggg
gcaggctttgcgctggccacgcacgatcttgagatccgcggtgccggtgaactgctgggg
gaagaccagagcggctccatggaaaccatcggcttctcgctctatatggagctgctggag
aacgcggttgatgctctgaaggccggacgcgaaccgtcgctggaggatctcaccagccag
cagaccgaagtcgagttgcgtatgccttctctgctgccggacgatttcattccggatgtg
aatacgcgtctgtcgttctataaacgcatcgccagtgcgaagacggaaaacgagctggaa
gagattaaggtggaactgattgaccgttttggcctgctgcccgatgcggcgagaaatctg
ctggatatcgcgcgcctgcgtcaacaggcacagaagctgggcattcggaagcttgaaggc
aacgaaaaaggcggcgtgattgaattcgccgagaagaaccacgtcaacccgatgtggctg
atcggcctgctgcaaaaacagccgcagcatttccgcctggatggcccgacacgtctgaga
tttacccaggagctgacggagcgcaaaacccggatggactgggtgcgtaattttatgcgc
cagctggaagagaacgcgatcgcctga
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