Edwardsiella piscicida C07-087: ETAC_00275
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Entry
ETAC_00275 CDS
T02509
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-mannoheptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
etc
Edwardsiella piscicida C07-087
Pathway
etc00540
Lipopolysaccharide biosynthesis
etc01100
Metabolic pathways
etc01250
Biosynthesis of nucleotide sugars
Module
etc_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
etc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
ETAC_00275 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
etc01005
]
ETAC_00275 (rfaD)
Enzymes [BR:
etc01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
ETAC_00275 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
etc01005
]
Core region
ETAC_00275 (rfaD)
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
ThiF
KR
adh_short
Ldh_1_N
NAD_binding_10
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AGH72188
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Position
complement(55801..56730)
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AA seq
309 aa
AA seq
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MIIVTGGAGMIGSNIVKALNDKGYTDILVVDNLKDGTKFVNLVDLDITDYMDKEDFIAGI
VAGDDFGDIDAVFHEGACSSTTEWDGKYVMDNNYQYSKELLHFCLERQIPFLYASSAATY
GMTDKFVEDRRYEGPLNVYGYSKFLFDQYVRRILPHAESQICGFRYFNVYGPREGHKGGM
ASVAFHLNTQINNGEQPKLFEGSENFRRDFIYVGDVADVNLWFWENGVSGIFNCGTGNAE
SFQAVADAVVAYHQKGSVTYIPFPDKLKGRYQAFTQADTTQLRAAGYSRPFKTVAQGVRE
YMEWLNRKP
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgattattgtcactggcggcgccggtatgatcggcagcaacatcgttaaggcactgaac
gataaaggctataccgacattctggtggttgataacctcaaggacggcacaaagtttgtg
aacctggtcgacctggatatcaccgactatatggacaaagaggatttcattgccggcatc
gttgctggcgatgactttggcgatatcgacgcggtattccacgaaggcgcctgctcttcc
accaccgagtgggatggcaagtacgtcatggataacaactaccagtactccaaagagctg
ctgcacttctgcctggagcgtcagatccccttcctgtatgcctcttccgccgcaacctat
ggcatgacggacaaatttgtggaggatcgccgctacgaaggtccgctgaacgtatatggc
tactccaaattcctgtttgaccagtatgtgcgccgcatcctgccccatgccgagtctcag
atctgtggcttccgctatttcaatgtctatggcccgcgtgaaggtcataaaggcggtatg
gccagcgttgccttccatctgaatacccaaatcaacaacggagaacagcctaaactgttt
gaaggcagcgagaactttagacgcgacttcatctatgtgggcgatgttgcggacgttaac
ctgtggttttgggaaaacggcgtctccgggatctttaactgcggcaccggcaacgccgag
tctttccaggccgtcgctgacgccgtcgtggcgtatcaccagaaaggcagcgtgacctat
attccgttcccggacaaactcaaagggcgctaccaggccttcacccaggcggataccacc
cagctgcgcgcggccggctacagccgtccgtttaagaccgtggcacagggcgtgcgtgaa
tatatggaatggctgaaccgtaagccctaa
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