Edwardsiella piscicida C07-087: ETAC_01570
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Entry
ETAC_01570 CDS
T02509
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
etc
Edwardsiella piscicida C07-087
Pathway
etc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAC_01570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etc03019
]
ETAC_01570
03016 Transfer RNA biogenesis [BR:
etc03016
]
ETAC_01570
Enzymes [BR:
etc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ETAC_01570
Messenger RNA biogenesis [BR:
etc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ETAC_01570
Transfer RNA biogenesis [BR:
etc03016
]
Prokaryotic type
tRNA degradation factors
ETAC_01570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
HTH_12
S1
Rho_RNA_bind
RNase_II_C_S1
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
AGH72447
LinkDB
All DBs
Position
383455..385905
Genome browser
AA seq
816 aa
AA seq
DB search
MSQDPYLEREAEKYASPIPSREFILMHLAKRKTPASREELAQELALSSEEDLEALRRRLR
AMERDGQLIFTRRQCYALPERLDLIKGTVIGHRDGFGFLRSEGQKDDLYLSPEQMKMCMH
GDVILAQVTGTDRRGRKEVRVVRVVEPRTGLIVGRYFTDAGTGFVVPDDGRLSFDILIPS
DAIAGARMGYVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRSHDIPHSWPEQ
VERQVADLSEDVPEAAKVGRIDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPNTALDHEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIA
ASGRLSSYKFYEAVMSSHARLTYTKVAHILAGDPDLRAQYHALVKPLEELHALYKALDHA
REERGGISFETEEAKFIFNAERRIERIEPTVRNDAHKLIEECMILANISAARFMEKNHEP
ALFRIHDKPSEDHVMALRSVLAELGLSLGGGTQPEPKDYALLMDKVADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALQAYAHFTSPIRRYPDLSLHRGIKYLLAREHGHAERWTPSG
GWHYHTEDMLQLGEHCSMTERRADEATRDVSDWLKCDFMQDHVGQTYGGIITSVTGFGFF
VRLDDLFIDGLVHVSTLDNDYYRFDQIGQRLIGESSGQVYRLGDKVEVKVDAVHLDERKI
DFALISTARGVRGAGKTARNKARQANGGAEKKPSRSARRGGKMPANFAPDSVQRRGDEAA
PAQKGKGKGKGKKPSAQTRKIAASTKAKRARKKTTD
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccctatctggaacgtgaagctgaaaagtacgcctccccgatccccagc
cgtgaatttatcctgatgcacctggccaagcgcaagacgcccgccagccgagaagagctg
gcccaggagctggcgctgagcagcgaggaggatctggaggcattgcgtcgtcgcctgcgc
gccatggagcgcgacgggcagctgatttttacccgccgccagtgctatgcgctgccggag
cgtcttgatctgattaaaggaacggtgattggtcaccgcgatggcttcggcttcctgcgc
agcgaggggcagaaagacgatctctatctgtcgccggagcagatgaagatgtgcatgcac
ggcgacgtgatcttggcgcaggtgaccggcaccgatcggcgcgggcgcaaagaggtgcgc
gtggtgcgcgtggtggagccgcgcaccgggctgatcgtcgggcgctactttaccgacgcc
ggtaccggctttgtggtgccggacgatggccgtctgagctttgatatcctgatcccgtcg
gatgccatcgccggcgcccgcatgggctatgtggtggtggtcgagctgacccagcgtccg
acgcggcgcaccaaggccgtcggcaagatcgttgaggtgctcggtgacaatatgggcacc
ggcatggcggtcgatatcgccctgcgcagccatgatattccccactcttggccggagcag
gtcgagcgtcaggtggccgatctgagcgaagacgttcccgaggccgcgaaggtgggacgt
atcgatttgcgcgatctgccgctggtcaccattgacggtgaggatgcgcgtgacttcgac
gatgcggtgtactgcgagaagaaacgcggcggcggctggcgcctgtgggttgccattgcc
gacgtcagctactatgtgcgacccaataccgcgctggaccacgaggcgcgcagccgcggt
aactcggtgtactttccctctcaggtcgtgccgatgctgccggaggtgctctccaacggg
ctgtgctcgctgaacccgcaggtcgatcgtctgtgtatggtgtgtgaaatgaccatcgcg
gccagcggacgcctctcctcctataagttttatgaggcggtcatgagctcccacgcgcgt
ctgacctacaccaaggtggcgcatatcctggccggcgatccggatctgcgcgcgcagtac
catgcgctggtcaagccgctggaggagctgcacgcgctgtataaggcgctggatcacgcc
cgcgaagagcgcggcggcatctcctttgaaaccgaagaagctaagtttatcttcaacgct
gagcggcgcatcgagcgtatcgagcccacggtgcgtaacgatgcccataagctgatcgaa
gagtgtatgatcctggccaatatctcggcggcgcgctttatggagaaaaaccacgagccg
gcgctgttccgtattcatgacaagcccagcgaagaccatgtgatggcgctgcgcagcgtc
ctggcggagctggggctctccctggggggcggaactcagccggagccgaaggactacgct
ctgctgatggataaggtggcggatcgtcccgaccatgagatgctgcaaacgatgctgctg
cgctccatgaagcaggccgtatacgatccggaaaaccgcggtcacttcggtctggcgctg
caggcctatgcccactttacttcgcctatccggcgctatcccgacctgtcgctgcaccgt
ggcattaagtacctgctggcgcgcgagcatggccacgccgagcgctggacgccgagcggc
ggctggcattaccacacggaagacatgctgcagctgggggaacactgctccatgacggag
cggcgcgccgatgaggcgacgcgcgatgtctccgactggctgaagtgcgactttatgcag
gatcacgtcggtcagacctacggcggtatcatcaccagcgttaccggctttggcttcttt
gtccgcctcgacgatctgtttatcgatgggctggtgcatgtatcgaccctggataacgac
tattaccgctttgatcagatcggccagcgcctgatcggggagtcctccggccaggtatat
cggctgggcgataaggtggaggtgaaggtcgatgcggtacatctggatgagcgcaagatc
gacttcgccctgatctcgacggcgcgcggcgtgcgcggcgcgggtaagacggctcggaac
aaggcgcgtcaggcgaacggcggggcggagaagaagccgtcgcgcagcgctcggcgcggt
ggtaagatgccggccaattttgcgccggatagcgtccagcgccgcggcgatgaggccgcc
cctgcccagaaaggcaagggaaaaggcaaaggtaaaaagccgtcggctcagacgcgtaaa
atcgccgcgtcgaccaaggccaagcgggcgcggaagaaaacgaccgactaa
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