Edwardsiella tarda FL6-60: ETAF_0042
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Entry
ETAF_0042 CDS
T02091
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
etd
Edwardsiella tarda FL6-60
Pathway
etd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
etd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ETAF_0042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
etd03400
]
ETAF_0042
Enzymes [BR:
etd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ETAF_0042
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ETAF_0042
DNA repair and recombination proteins [BR:
etd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ETAF_0042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
RNHCP
Motif
Other DBs
NCBI-ProteinID:
ADM40165
UniProt:
A0A0H3DNS4
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All DBs
Position
40941..41750
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AA seq
269 aa
AA seq
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MPELPEVETSRRGIAPFLEGKTLSHLTVRQPRLRWPVSETLLTLRDRPILSVQRRAKYLL
LALPEGWIVIHLGMSGSVRILPAQTPPQKHDHVDLLLTDGMMLRYTDPRRFGAWLWYDDL
ATASVLAHLGPEPLSEAFSAEYLLERARGRRTAVKPWLMDNTLVVGVGNIYASESLFSAQ
IHPDRLAGSLSADEASLLVQTIKAVLQRSIDQGGTTLRDFLQADGKPGYFAQQLQVYGRA
GEACLTCGTTIKSSKHGQRTTFYCPHCQR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccggaagtagaaaccagccggcgcggtattgcgccgtttttggagggg
aaaacgctctcccatctgacggtgcgccagccgcgcctgcgctggccggtttccgaaacg
ctgctgacgctgcgcgatcggccgatactgagcgtgcagcggcgtgccaagtatctgctg
ctggcgttgcctgaggggtggatcgtcatccatcttggcatgtcgggtagcgtcaggatc
ctgccggcacagacgccgccgcagaagcacgatcacgtcgatctgctgctgacggatggc
atgatgctgcgctataccgatccgcgccgctttggcgcttggctgtggtatgacgatctg
gcgacggccagcgtactggcgcatctggggccggagccgctcagcgaggcgttcagcgca
gagtacctgctggagagggcgcgcggtcggcgtacggcggtgaagccgtggctgatggat
aacacgctggtggtcggcgtcggtaacatctatgccagcgagtcgctgttcagtgcacag
atccatccggatcgtctggcgggatcgctgagcgcagatgaagcgagcctgctggtgcag
acgatcaaggcggtgctgcagcgatccatcgatcaaggcgggacgacgctgcgcgatttt
ttacaggcggacggtaagccgggctactttgcgcagcagctacaggtctacgggcgggcg
ggggaggcgtgtctgacctgcggcacgaccatcaagagtagcaagcatgggcagcgcacc
acgttttactgcccacactgccagcgttaa
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