Empidonax traillii (willow flycatcher): 114059753
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Entry
114059753 CDS
T05887
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03030
DNA replication
etl03410
Base excision repair
etl03420
Nucleotide excision repair
etl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114059753 (RFC1)
03410 Base excision repair
114059753 (RFC1)
03420 Nucleotide excision repair
114059753 (RFC1)
03430 Mismatch repair
114059753 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
etl03032
]
114059753 (RFC1)
03400 DNA repair and recombination proteins [BR:
etl03400
]
114059753 (RFC1)
DNA replication proteins [BR:
etl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
114059753 (RFC1)
DNA repair and recombination proteins [BR:
etl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
114059753 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
AAA_14
AAA_22
PTCB-BRCT
BRCT_2
AAA_5
AAA_30
RuvB_N
RNA_helicase
AAA_17
AAA_16
AAA_18
nSTAND3
AAA_33
AAA_7
Zeta_toxin
TIP49
TCAD2
NTPase_1
Motif
Other DBs
NCBI-GeneID:
114059753
NCBI-ProteinID:
XP_027744361
LinkDB
All DBs
Position
Unknown
AA seq
1191 aa
AA seq
DB search
MPAPPVAAVTAARRAGPRELARRREHGTGSVPLGAGTAASMDIRKFFNVVPPGKQQQCET
VTKSAKIKNGEGPSNGKKREKETKVNNSPSDDDYKQIRTKKKRRVIYDSDSEEEVQSVKK
SKKTPEKKAATSKPGKVLKRDPVVYISETDEEDDFVNKRISLKPKENGTSAIGCPGTNSV
KKEDVKPQAKSKPLPPVKQTPTSALDYFGISSVQRSEKKLVSSKRKEPSQSRDSTLDDEA
IARQLQLEEDSELERQLHEDEEFARTLAMLDETPQKKKARKDAGGEQTGLSINSSPDVAA
GYKQLERVKATDSTGEAKNYTAKPQTKSEQFNLSPQSSDDKTARALADKTLPLKPVSRLV
SLKQKEEIAEKERGAQNLVSKEKTASGKEEKTTPKKEKISPKKGESVSPEDSEKKRINYQ
AYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGN
VSKKTNYLVMGRDCGQAKREKASALGTKVIDEDGLFDLIRTMPGKKSKYELAAETEAKKV
ESRPKRTPQKAEAGKRNFSPFERETDNKKHKSTPEKEDTIKSVKKETTAVRKLTDFKRQT
AEEKKTPKPEGNLVSEVNEDGTERLLWVDKYKPASLKALIGQQGEQSCANKLLRWLRNWH
NTVEDGQAKTNKAGSKDDGTSFKAALLSGPPGVGKTTTAALVCKELGYSYVELNASDTRS
KNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMDEVDGMAGNEDRGGIQELIGLIRH
TKIPIICMCNDRNHPKIRSLVHYCLDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEI
ILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFATGEEAS
RMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSKAADSICDGDIVDK
QIRSKQNWNLLPTQAIYASVLPGELMRGHMSQFPVFPSWLGKFSSTGKHDRIIQELAMHM
SLRTQACKRTVNMEYLSYLRDALVKPLKDLGADGVQQAIAFMDSYCLMKEDVENIMEIST
WGGKPSSFSKLDSKVKAAFTRAYNKEAHLTPYSLSSVKASKRQSGSAGTLELSEDLNVEE
TQSDEDEQDTVESDAMIKQKKAKSSRLPKREKNEETTKKEGKRKEKTRHLE
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccccgcccgtcgcggccgtgacggcagcgcggcgcgccgggccgcgggagttg
gcgcgaaggcgggagcatggaaccgggagcgtcccgctaggcgcgggcaccgccgccagc
atggatatccggaaattctttaatgttgtacctcctggaaagcaacaacagtgtgagact
gtgacgaagagtgcaaaaattaaaaatggcgaaggaccctcaaatgggaagaaaagggaa
aaggagactaaggtgaacaattcacccagtgatgatgattacaaacaaatacgtacgaaa
aagaagaggagagtgatctatgattcagattcagaagaggaggtgcagtcagtgaaaaaa
tccaagaagacacctgagaaaaaagcagctacttcgaaacctggtaaagttctgaagcga
gatcctgttgtttatatttcagagacagatgaagaagatgactttgtcaataaaagaatt
tccctgaaaccgaaggagaatgggacatcagcgatcggttgtccaggaacaaattctgtg
aaaaaggaagatgtaaaaccacaagctaaaagcaaaccactccctccagtgaaacagact
cccacctctgcacttgattactttgggataagtagtgtccaacggtcagaaaagaaattg
gtatccagtaaaaggaaagaaccttcacaaagcagagacagcacactagatgatgaggcc
attgctaggcaactgcagcttgaagaggattcagagctggagagacagctgcatgaagat
gaagaatttgctagaactttggccatgttggatgaaacaccacagaagaaaaaggctcgg
aaagatgcaggaggagagcaaacgggattgagcatcaatagcagtcctgatgtggcagca
ggatataagcagttggaaagagtgaaagcaacagattcaacaggtgaagcaaagaattac
actgcgaagccacaaactaaatctgaacagtttaatttatccccacaatcatctgacgat
aaaacagcaagagcgttggcagataagaccttgcctttgaaacctgtctcaaggctcgtg
tctctgaaacaaaaagaagagattgctgaaaaggaaagaggtgctcaaaatttagtatca
aaagaaaaaactgcttcagggaaagaagagaagacaacaccaaagaaggaaaaaatttct
cccaagaagggtgagtctgtaagtcctgaggactctgaaaagaagcgaatcaattaccaa
gcgtaccgaagcttccttaatcgtgagggtccaaaagcactggggtccaaagagatacct
cagggagctgaaaactgcttggaaggcctgacattcgtaattacgggtgttctggagtgt
attgaaagagatgaggccaagtccttgattgaacgttatggaggaaaagtaactggcaat
gtcagcaaaaagacaaactacctggtgatggggcgagactgtggccaggcaaaacgtgaa
aaggcatcagctttgggtacaaaagttattgatgaggatggcctgtttgatctgattcga
actatgccaggcaaaaagtccaaatatgagctggcagctgaaacagaggcaaagaaagtg
gagtcaagacctaaaaggacaccacagaaagctgaagctggaaaaaggaattttagcccc
ttcgaaagggaaactgataataaaaagcataagtctactcctgaaaaagaagataccatc
aaatctgtcaagaaagaaaccactgctgttcgaaagcttacggacttcaaacgtcagact
gcagaggagaagaaaaccccaaaacccgaggggaatttggtttctgaggttaatgaagat
ggaacagagagattgctatgggtggataaatacaagcctgcatctcttaaggcacttatt
ggtcagcagggtgagcaaagctgtgccaataaactgctccgatggctcagaaactggcac
aatactgtggaagatggacaagcaaaaaccaacaaagctggaagcaaagacgatgggact
agttttaaagcagcattactttctggtccacctggagttggtaaaactactacagctgct
ttggtttgtaaggaactggggtacagctacgtggagctgaatgccagtgacactcgcagt
aagaacagtctgaaggaagtagttgctgaatcgctgaacaacaccagcatcaaggatttc
tgttctggcacatcctcatcagttagcgggaaacatgtattgatcatggatgaagtggat
ggtatggcaggcaatgaagacagaggagggattcaggagttgattggtttgatccgacac
acaaagatacccatcatttgcatgtgcaatgatcgcaaccatcctaaaatccgctccttg
gtccactactgcttggatcttcgttttcagagacctcgtctagaacagattaagggtgcc
atgatgtctattgcatttaaagaaggtttaaaaattcccccacctgcaatgcaagagata
atcctggcagcaaatcaggacatcagacaggttttacataatcttaatatgtggtgtgca
aaagataagtcattgacttatgatgaggctaagacagatgccagcagagccaaaaaggat
atcaaattgggcccttttgatgttgtccggaaggtttttgctactggagaggaagcttct
cgtatgtctctcatagacaaatcagatcttttcttccatgactattccctagcacctctt
tttgtccaggagaactatgtacatgtgaaaccagctgctgctggaggaaatctgaaaaag
cacttggtgctcttgagtaaagcagctgatagtatatgtgatggtgatattgtggacaaa
cagattcgtagcaagcagaactggaatcttcttccaacccaggctatttatgcaagtgtt
ctcccaggggagctgatgagaggtcacatgtcccagtttcctgtctttcccagctggttg
gggaaattttcatccacaggcaaacacgatcgtatcattcaagaactggcaatgcacatg
agtctcagaacccaggcatgcaagaggacagtaaatatggagtatttgtcgtatttgcgg
gacgcacttgtcaagcccttgaaagacttgggagcagatggtgtacaacaagctatagca
ttcatggactcttactgcttgatgaaagaagatgttgaaaatatcatggaaataagcacg
tggggaggcaaacccagttctttttcaaagctggattccaaggtcaaagcagctttcacc
cgtgcctacaacaaagaggcacatctgactccatattcacttagttctgtcaaggcatct
aaaaggcagtcgggatctgcagggacgttggaactgagtgaagacttgaatgtggaagag
acccagtctgatgaggatgagcaagacactgttgaaagtgatgcaatgattaagcaaaaa
aaggcgaagtcttccaggctgccaaaaagagagaaaaatgaagaaacaacaaaaaaagaa
gggaaaagaaaagagaaaacaagacatttggagtaa
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integrated database retrieval system
