KEGG   Empidonax traillii (willow flycatcher): 114063733
Entry
114063733         CDS       T05887                                 

Gene name
THBS1
Definition
(RefSeq) thrombospondin-1
  KO
K16857  thrombospondin 1
Organism
etl  Empidonax traillii (willow flycatcher)
Pathway
etl04115  p53 signaling pathway
etl04145  Phagosome
etl04350  TGF-beta signaling pathway
etl04510  Focal adhesion
etl04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:etl00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04350 TGF-beta signaling pathway
    114063733 (THBS1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    114063733 (THBS1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    114063733 (THBS1)
  09143 Cell growth and death
   04115 p53 signaling pathway
    114063733 (THBS1)
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    114063733 (THBS1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:etl04131]
    114063733 (THBS1)
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:etl00536]
    114063733 (THBS1)
   04990 Domain-containing proteins not elsewhere classified [BR:etl04990]
    114063733 (THBS1)
Membrane trafficking [BR:etl04131]
 Endocytosis
  Phagocytosis
   Opsonins
    114063733 (THBS1)
Glycosaminoglycan binding proteins [BR:etl00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   114063733 (THBS1)
Domain-containing proteins not elsewhere classified [BR:etl04990]
 Thrombospondin domain-containing proteins
  Thrombospondins
   114063733 (THBS1)
SSDB
Motif
Pfam: TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_3 cEGF EGF_CA TSP1_ADAMTS Laminin_G_3 TSP1_CCN EGF Laminin_G_2
Other DBs
NCBI-GeneID: 114063733
NCBI-ProteinID: XP_027751995
LinkDB
Position
Unknown
AA seq 1177 aa
MGPATALCLLLLVLGGSETKRTAESRNDDNSVFDLFELIGFMRKGGGRRAPGVYLVKGPE
SSSPAYRIEDASRIPAVPDSKFQDLLDAIHAEKGFILLATLRQAKKSRGTLLSVEQKDGS
GHVFSLVSNGKAGSLDLSLSGDGKQQLVSVEDVLLATGHWKNITLFVQEDRAQLYVGCEK
MENAELDIPIQNIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCS
SSTSAIITLDNPINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMVTTL
QDRVRKVTEENEIIAKVVQITPGACIHNGILHKNKDEWTIDSCTECTCQNSATICRKVSC
PLMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRC
EGSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSPVPQLNGKP
CEGEARENKPCQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVG
EARGTQVCNKQDCPIDGCLSNPCFAGATCTSSPDGSWKCGACPAGYHGDGIHCQDIDECK
EVPDACFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRSVEDAMTNKQVCKPRNPCTDG
THDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHC
KKDNCPNLPNSGQEDYDKDGIGDACDNDDDDDGIPDDRDNCPFIYNPQQYDYDRDDVGDR
CDNCPYNHNPDQTDTDNNGEGDACAVDIDGDGVLNERDNCQYVYNVDQRDTDLDGVGDQC
DNCPLEHNPDQEDTDSDRIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDA
CDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDSVPDIDDICPENVEIS
ETDFRRFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFF
INTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPG
EHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMA
DSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDP
NT seq 3534 nt   +upstreamnt  +downstreamnt
atggggccagcgactgcgctctgcctcctgctcctcgtgctcggaggctcagagaccaag
cgcaccgcagagtccaggaatgatgataacagtgtttttgatctctttgaactcattggc
ttcatgcggaagggaggtgggcgccgggcacccggggtgtacctggtgaagggaccagaa
tcctccagccctgcttaccgcattgaggatgccagtcgcatccctgctgtccctgactca
aagttccaagacttattagatgccattcatgctgagaagggcttcatcctcctggccact
ctccggcaagccaagaaaagcagaggcacgctcctgtctgtggaacagaaagatggctct
ggtcatgtcttcagtctagtatcaaatggcaaggcaggctccctggacctgagcctttct
ggtgatggcaagcagcaattagtgtcagtagaggatgtcttgctagctacaggacactgg
aagaatatcaccctgtttgtgcaggaggaccgagctcagctctatgtggggtgtgaaaaa
atggagaatgctgaactggatatccccatccagaacatcttcactagggacttggccagc
agtgccaggctccgtattgccaaagggggagtcaatgacaacttccagggactgctgcag
aatgtgcggtttgtgtttggaacaactctggaaactatcctgaggaacaaaggctgctcc
agctccactagtgcaatcattactttggacaatcccatcaatggttccagcccagctatc
cgcactaattacattggccataaaacaaaggacatccaagcagtctgcggattttcctgt
gatgaactaacaaatatgtttgtggaactgcaagggcttcggtccatggttacaacactt
caagacagagttcgcaaagtgactgaagaaaatgaaatcattgccaaagtggtccagatc
actcctggagcatgcattcataatggaatcttgcacaaaaataaagatgagtggactatt
gacagctgcactgaatgtacttgccagaactctgctactatatgccggaaagtgtcctgt
cctctcatgccttgttccaatgccactgtgcctgatggggagtgctgtccccggtgctgg
cctagtgactatgccgatgatggatggtctccttggtctgaatggacctcatgttcagtg
acctgtggtaatggaattcagcagagaggacgttcctgtgacagtctcaataaccgctgc
gaagggtcttctgtgcagactcggacctgccaccttcaggagtgcgataagagatttaaa
caggatggtggctggagtcactggtcaccgtggtcgtcatgttctgtcacttgtggcacg
ggcatcatcactagaattcgtctctgcaactctccagtaccacagctgaatggcaaacct
tgtgagggtgaggcaagagaaaacaaaccctgccagaaagatccttgcccaattaatggc
aactggggaccatggtctccatgggatgcttgcacagtgacatgtggaggaggacttcaa
aaacgtagccgtctctgcaataatcctgagcctcagtatggagggaagacttgtgtaggt
gaagctagagggactcaggtctgcaacaaacaggactgtccaattgacgggtgtctgtct
aatccctgctttgcgggggctacatgtaccagctcccctgatggttcctggaagtgcggt
gcctgtcctgctggctaccatggtgatggcattcactgccaagatattgatgagtgcaaa
gaggttcccgatgcctgctttgtcttcaacggtgtgcacaggtgtgagaatactgaacct
gggtacaactgtctgccttgtccaccacgtttcactggaacacagccatttggtcgcagt
gttgaggatgccatgactaacaaacaggtctgcaagccacgtaatccatgcactgatgga
acacatgactgcaacaagaatgccaaatgcaattaccttggccacttcagtgaccccatg
tatcgctgtgaatgtaaaccaggctatgctggtaatggcataatttgtggagaagatact
gacttggatggatggccaaatgagaaccttgtttgtgttgccaatgccacttaccactgt
aaaaaagataactgccctaatctgcctaactctgggcaggaagactatgataaggatggg
attggtgatgcctgtgacaatgatgatgatgatgatggcattcctgatgaccgggacaac
tgtccatttatctacaacccccagcagtatgactatgacagggatgatgttggtgaccgc
tgtgataactgtccctacaatcacaaccctgatcaaacagacactgacaataatggagaa
ggagatgcgtgtgcagtagatattgatggagatggggtgcttaatgaaagggacaactgc
cagtatgtctataatgtagaccagagggatacagacttggatggtgttggagatcagtgc
gataactgtcccctggaacacaatcctgaccaggaagacaccgattctgaccgcatagga
gatcagtgtgacaacaaccaggacatagatgaagatggccatcaaaataatcttgataac
tgcccctatgtgcccaatgccaatcaagctgaccatgacaaggatggaaaaggtgatgcc
tgtgaccatgatgatgacaatgatggtatccctgatgacaaagataactgcagattggtt
gccaacccagatcaagctgattctgatggtgatggacgtggagatgcttgcaaagatgac
tttgaccaagacagtgtgccagacattgatgatatctgccctgaaaatgtggaaattagt
gagactgatttccgaagatttcagatgattcccctggatcccaaaggaacgtcccaaaat
gatccaaactgggttgttcgtcaccagggtaaagaactggttcagacagtgaactgtgac
cctggccttgcagtcggttttgatgaattcaatgctgtggacttcagtggtaccttcttc
atcaatactgaaagggatgatgactatgctggctttgtatttggctaccaatctagcagt
cgtttctatgttgtcatgtggaagcagatcactcagtcttactgggactccacaccaacc
aaagctcaaggctactcaggtctctccatcaaagttgtgaattccaccactggtccagga
gaacaccttcgtaatgctctgtggcacacaggaaacactcctggccaggtgagaactttg
tggcatgatcctcgtcacataggctggaaagacttcactgcatacagatggcgtcttagc
catagaccaaagactggcttcatcagggttgtaatgtatgaagggaagaaaatcatggca
gactcaggaccaatctatgataaaacctatgctggtggtcggctaggattatttgtcttc
tctcaagaaatggtgttcttctcagatcttaaatatgaatgcagagatccataa

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