Escherichia coli UMNK88 (ETEC, porcine): UMNK88_5289
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Entry
UMNK88_5289 CDS
T02001
Symbol
holD
Name
(GenBank) DNA polymerase III, psi subunit HolD
KO
K02344
DNA polymerase III subunit psi [EC:
2.7.7.7
]
Organism
eun
Escherichia coli UMNK88 (ETEC, porcine)
Pathway
eun03030
DNA replication
eun03430
Mismatch repair
eun03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
eun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UMNK88_5289 (holD)
03430 Mismatch repair
UMNK88_5289 (holD)
03440 Homologous recombination
UMNK88_5289 (holD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eun03032
]
UMNK88_5289 (holD)
03400 DNA repair and recombination proteins [BR:
eun03400
]
UMNK88_5289 (holD)
Enzymes [BR:
eun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
UMNK88_5289 (holD)
DNA replication proteins [BR:
eun03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
UMNK88_5289 (holD)
DNA repair and recombination proteins [BR:
eun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
UMNK88_5289 (holD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_III_psi
CSTF_C
Motif
Other DBs
NCBI-ProteinID:
AEE59752
LinkDB
All DBs
Position
5153768..5154181
Genome browser
AA seq
137 aa
AA seq
DB search
MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA
LTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQVASPALTELRANPTARAA
LWQQICTYEHDFFPRND
NT seq
414 nt
NT seq
+upstream
nt +downstream
nt
atgacatcccgacgagactggcagttacagcaactgggcattacccagtggtcgctgcgt
cgccctggcgcgttgcagggggagattgccattgcgatcccggcacacgtccgtctggtg
atggtggcaaacgatcttcccgccctgactgatcctttagtgagcgatgttctgcgcgca
ttaaccgtcagccccgatcaagtgctgcaactgacgccagaaaaaatcgcgatgctgccg
caaggcagtcgctgcaacagctggcggttgggtactgacgaaccgctatcactggaaggc
gctcaggtggcatcaccggcgctcaccgaattacgggcaaacccaacggcacgcgccgcg
ttatggcaacaaatttgcacatatgaacacgatttcttccctcgaaacgactga
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