KEGG   Eutrema salsugineum: EUTSA_v10006843mgHelp
Entry
EUTSA_v10006843mg CDS       T02985                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
eus  Eutrema salsugineum
Pathway
eus03030  DNA replication
eus03410  Base excision repair
eus03420  Nucleotide excision repair
eus03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EUTSA_v10006843mg
   03410 Base excision repair
    EUTSA_v10006843mg
   03420 Nucleotide excision repair
    EUTSA_v10006843mg
   03430 Mismatch repair
    EUTSA_v10006843mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:eus03032]
    EUTSA_v10006843mg
   03400 DNA repair and recombination proteins [BR:eus03400]
    EUTSA_v10006843mg
Enzymes [BR:eus01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EUTSA_v10006843mg
    6.5.1.6  DNA ligase (ATP or NAD+)
     EUTSA_v10006843mg
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     EUTSA_v10006843mg
DNA replication proteins [BR:eus03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    EUTSA_v10006843mg
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     EUTSA_v10006843mg
DNA repair and recombination proteins [BR:eus03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     EUTSA_v10006843mg
   NER (nucleotide excision repair)
    Other NER factors
     EUTSA_v10006843mg
   MMR (mismatch excision repair)
    Other MMR factors
     EUTSA_v10006843mg
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 18994060
NCBI-ProteinID: XP_006417724
UniProt: V4L1C2
LinkDB All DBs
Position
Unknown
AA seq 790 aa AA seqDB search
MLAIRSSNYFPCISSLSAKIRFSHFSSVLLSFNRQVSSLRFSSCHRAMSSSRPSAFDALM
SNARASARKKTPQVSTSSRSPNKRKIAEIQDADLAKTPVPECKTENPVGPISDSAEPRSD
TPSTVEDSKNGAKKSRVLSQTGKIDELKSKIGLLKKKPGDFNPEKVSCWEKGERVPFLFI
ALAFDLISAESGRIVITDILCNMLRTVIATTPEDLVATVYLAANEIAPAHEGVELGIGEG
SIIKAISEAFGRTESQVKKLNTELGDLGLVAKGSRSSQTMMFKPEPLTVVKVFNTFRLIA
KESGKDSSEKKKDRMKALLVAATDCEPLYLTRLLQAKLRLGFSNQTVLAALGQAAVYNEE
HSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALLTVGVWNLPKTCNFTLGVPIGPML
AKPTKGVGEILNKFQDTVFTCEYKYDGERAQIHCMEDGTFEIYSRNAERNTGKYPDVALA
LSRLKKPSVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFDMLY
LNGQQLIQENLNVRREKLYDSFEEDPGYFQFATALTSSDIDEIQKFLDASVDIGCEGLII
KTLNSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVFGAFLLACYD
VDKEEYQSICKIGTGFSEAVLEERSTSLRSRVIATPKQYYRVGDSLNPDVWFEPTEVWEV
KAADLTISPVHRAATGIVDPDKGISLRFPRLVRVRGDKKPEEATSSEQIADMYQAQKHNH
PSNEVKGDDD
NT seq 2373 nt NT seq  +upstreamnt  +downstreamnt
atgctagcgattcgatcatcaaattactttccatgcatatcttctctctccgctaaaatc
cgattttctcatttctcctccgtgttgctgtcttttaaccgccaagtttcctccttgcgc
tttagctcctgccacagagccatgtcttcttctcgcccgtccgcatttgacgctctcatg
tccaatgctcgcgcctccgccaggaagaagacgccccaggtctctacttcctctcgctcg
ccgaacaaaaggaaaatcgccgaaatccaagacgccgatttggccaaaactcctgttccg
gaatgtaaaacggagaatccggtggggcctatctctgattccgcagaacccaggtcggat
acgccttcaactgtggaagactcaaagaacggagcgaaaaagtctagggttttgagtcag
acgggcaaaattgacgaactgaagagcaaaattggattgctgaagaagaagcccggtgat
ttcaatccggaaaaagtgtcttgttgggagaaaggggagagagttccgtttctgtttatc
gcattggcttttgatctgatttcagctgaaagtggccggattgtgatcactgatattctc
tgtaacatgttgagaaccgttattgccactactcccgaagatttggtcgctactgtctat
cttgcggcgaacgagattgcccctgctcatgaaggagttgagttgggaattggtgaaggt
tccattatcaaggcaatctccgaagcttttggtagaactgagtcgcaggttaagaaactg
aatacggaactgggagacttgggacttgtagcaaaaggaagccgttcgtctcagactatg
atgtttaagcccgaaccattgactgttgtcaaggttttcaatacatttcgactaattgct
aaggaaagtggaaaagatagttcagaaaagaagaaggaccgaatgaaggcacttcttgtg
gcagcaacagactgcgaacctctttacttaactcgtttacttcaggcaaaattgcggtta
gggttctcaaatcagactgtgttagctgccttgggacaagctgctgtttacaacgaagag
cactcaaagccacccccaaataccaagtctcctttagaagaggctgcgaagattgttaaa
caagtattcactgtgctacctgtctatgatatcattgttcctgctcttctaactgttggt
gtgtggaatcttcctaaaacttgtaattttacactgggtgttccaattggacccatgctt
gcaaaaccaacaaaaggtgttggtgagatactgaataagttccaggacaccgttttcaca
tgcgaatacaaatacgacggagagcgtgcacagatacattgtatggaggatggtacattc
gagatatatagtcgaaatgctgaaagaaacactggaaaataccctgatgttgctcttgcg
ttatcaagattaaagaagccctctgtgaaatcttttattttggattgtgaggttgttgct
ttcgacagggagaaaaagaaaattcttccattccagattttgagcactcgagcccgcaaa
aatgtgaatgtcaatgatatcaaagttggcgtatgcatctttgcttttgacatgttatat
ctaaatggccagcaacttatccaggagaatcttaatgttcgccgagagaagctatatgat
tcatttgaggaagatcccggatatttccagtttgcaactgctctaacatccagcgatatt
gatgaaatacaaaagtttctggacgcttctgttgacattggctgtgaaggtttaatcatt
aaaacattgaattcagatgctacctatgagcctgcaaagcgatcaaataattggctaaaa
ctgaagaaagactatatggacagcattggggactctgtggatcttgtaccaattgctgct
ttccatgggcgtggcaaacgcacaggtgtctttggtgcctttttactagcttgctacgat
gttgataaagaagaatatcagagcatttgtaaaataggtactggattttctgaagccgtg
cttgaagagcggtctacaagtcttcgttctagagtgattgctactccaaaacaatactac
cgagttggagacagcctcaatccagatgtttggttcgagcccactgaggtctgggaagta
aaagcagctgacttgacaattagccctgtgcatcgtgcagctactggcattgtggacccg
gataagggaatatctctacgttttcctcgtctggtccgtgtacggggagacaagaagcca
gaggaagcaacatcatcagaacagattgctgatatgtaccaagctcagaaacacaatcat
ccaagcaatgaagtcaaaggtgatgatgattga

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