KEGG   Ficedula albicollis (collared flycatcher): 101808635Help
Entry
101808635         CDS       T02815                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    101808635 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fab03400]
    101808635 (LIG3)
Enzymes [BR:fab01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     101808635 (LIG3)
DNA repair and recombination proteins [BR:fab03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     101808635 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 101808635
NCBI-ProteinID: XP_005056585
UniProt: U3K569
LinkDB All DBs
Position
19
AA seq 983 aa AA seqDB search
MPTGGRALSHAARALGRGTALSCPRPQLPVPRAPSCSAGLSPACWCQLLLQPVSVPSPKQ
RRAARAFPLSLLLGSWLRSACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGK
IVPNPFTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEDKEIINKHI
SEANAKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFTAKPKNSEDAPANSAQQPSLS
AARCDPKHKDCLLREFRKLCTMVAENPSYNVKTQIIRDFLRKGSAGDGFHGDVYLTIKML
LPGVIKIVYNLNDKQIVKLFSRIFNYNQEEMIRDLEQGDVSETVRICFERSKTCPPAARS
VLTIQEVDEFLIQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLRIYAGAKHVL
DALDPNAYEAFKASRNLQDVVERVLQNQLESEKEPGLKKTLSVQASLMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFP
GGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNNVSLMDRPL
CERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDLKGNYEPGK
RHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCS
GGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFS
RAEAHTADGISIRFPRCTRIRHDKDWQSATNLQQLKELYQLSKEKADFSVTAGEEDESTA
GSSGENDGNSRSSTPHSSIKSPPSKSPAKAQKAEESKGVIGSPEKSEEKRGEKRKASELE
DNGKKLPLLDIFTGVKLYLAPSVKDFARIRRYFIAFDGDLVSELDTASATHVIGDIGDSP
GAVRVTPRWIWECIRKRRLVAPC
NT seq 2952 nt NT seq  +upstreamnt  +downstreamnt
atgcccacgggcggcagggcgctgtcacacgctgcccgcgctctcggcaggggcactgcg
ctgtcctgccctcgcccgcagctccccgtgcccagagcgccgtcctgctctgccggactc
agccccgcttgctggtgccagctgctgctccagcctgtctccgtgccatccccaaagcag
cgccgtgctgcccgcgcttttcctctctccctgcttttgggcagctggctgcgctcggcc
tgcacggctgcagaggacatggcagagcagcgctactgcgtggactatgccaagcgaggc
accgcgggctgcaagaagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaag
atcgttcccaatcctttcaccgagtctggaggggacatgaaggagtggtaccatgtcaag
tgcatctttgagaagctggacaaggcccgggccaccaccaagaaaatcgaagacatcaca
gacttggaggggtgggaagagctgcaggatgaggacaaagaaataatcaacaagcacatc
tcagaagccaatgccaagactggaggtaccccgaagaaaaaggtgatagtgcaggcaaaa
ctcactgccacaggacagctgaccacaaaagatccaccaaagaaattctctggattcacg
gccaagccaaagaattcagaagatgcccctgcaaactcagcccagcagcccagcctgtct
gcagccaggtgtgaccccaagcacaaggactgcctgctgcgggagttccgcaagctctgt
accatggtggctgagaaccccagctacaatgtgaaaactcagatcatccgggacttcctc
aggaagggatctgcaggagatggttttcatggtgatgtatacctgaccattaagatgctg
ttaccaggtgtcattaaaatagtttacaacttgaatgataagcagattgtaaagctgttc
agcaggatttttaactacaaccaggaagaaatgatccgggacctggagcagggagatgtt
tctgagaccgtgcggatctgcttcgagcggagcaagacgtgtcctccagcagccaggagc
gtcctgaccatccaggaggtggatgaattcctcatccagctctccaagctcaccaaggag
gatgaccagcagagtgtcctgcagcagatcagtcgcaggtgtacgggcaacgacctgaag
tgcatcatcaggctaattaagcatgacttgagaatttatgctggagcaaagcacgtgctg
gatgctctggatcccaatgcctacgaggccttcaaggcctccaggaatctgcaggacgtg
gtggaacgggtgctgcagaaccagctggagtctgagaaggagccagggctgaagaagacc
ctgagtgtgcaggcctcactcatgaccccagtgcagcccatgctggctgaggcctgcaag
tccatcgagtacgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgac
ggcgagcgcgtgcaggtgcacaagaacggggatcacttcagctacttcagcaggagcctc
aaacctgtgctcccccacaaagtagcccattttaaggatttcatcccccaggctttccct
ggtgggcagagtatgatcctggattcagaagttctcctgattgacaataaaactggcaag
ccacttccttttgggactcttggtgtgcacaagaaagctgctttccaggatgccaacgtt
tgcctgtttgtgtttgactgcatctacttcaacaatgtcagcctgatggacaggcccctg
tgtgaacggcgcaagttcctccacgacaacatggtggagatccccaacaggatcctgttc
tcagagatgaaacatgtcacaaaagcttcagatctggcagacatgatcacccgagtcatc
cgggaggggctggaagggctggtgctgaaagatttaaagggaaattacgaaccagggaag
cgccactggctgaaggtgaagaaggattatctcaacgagggggcaatggctgacacagct
gacctggtggtgctgggggctttctatggacagggcagtaaaggtgggatgatgtccatc
ttcctcatgggctgctatgaccccaagagtgagaagtggtgcacggtgaccaagtgctct
ggtggccacgacgacgccaccctggcacgtctgcagacagagctggacatggtgaagatc
agcaaggatcctagtaaaattccaaggtggctaaaaattaacaaaatctactacccagac
ttcattgtcccagatccaaagaaagccccagtgtgggagatcaccggggccgagttctcg
cgggccgaggcgcacactgccgacggcatctccatccgcttcccgcgctgcacccgcatc
cgccacgacaaggactggcagagtgccaccaacctgcagcagctcaaggagctgtaccag
ctctccaaggagaaggctgatttcagtgttacagctggggaggaagatgagtccacagct
ggcagcagtggagagaatgatgggaattccaggtcttccacacctcacagcagtattaag
agtcccccaagcaagtcacctgcaaaagcccagaaggcagaagagagcaaaggagtcatt
ggctcccctgagaaatccgaggagaaacgaggggagaagagaaaagcatccgagctggag
gacaatggaaagaagctgccgctgctggacattttcacgggggtgaagctgtacctggcg
ccctccgtgaaggactttgcccgaatccgccgctacttcatcgccttcgacggggacctg
gtgtcagagttggacacggcctcggccacgcacgtcatcggggacatcggggacagcccc
ggcgccgtgcgcgtcacgccccgctggatctgggagtgcatccgcaagcgccggctggtg
gcgccgtgctag

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