Ficedula albicollis (collared flycatcher): 101816393
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Entry
101816393 CDS
T02815
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101816393 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101816393 (PARN)
Enzymes [BR:
fab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101816393 (PARN)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101816393 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
101816393
NCBI-ProteinID:
XP_005054114
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All DBs
Position
14:6901490..6948744
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AA seq
638 aa
AA seq
DB search
MEVIRSNFKDNLNKVYEAIEESDFLAIDGEFSGISDGPSVSELTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDDTEEKYIMKSFNFYIFPKPFNRNSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNSTKCPVTIPEDQKKF
VEKVVEQIEDLLKNEESESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIA
ITKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAISNSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVPIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCVNSFTGTSTVGKRSMSPIEEETGSDDMEEGEGQNPENDQTDSCADS
LPDGKKRPKKLKKIKTEQVPAGSLTTSSTGIFEVPETW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcaggagcaattttaaggacaacctaaacaaagtgtatgaggccattgaa
gagtcggacttcctggccatcgatggagagttttcaggaatcagtgatgggccttcagtt
agtgaattaacaaatggctttgacactccagaagaaaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaagtatgatgacacagaa
gaaaagtacataatgaagtcatttaacttctatatttttccaaaaccctttaacagaaat
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaacggaattccatatttaaatcaggaagaagagaga
cagctaagggaacagtatgatgaaaaacgttctcaagccaatggtgcaggatctctgtca
tatatttctcctaattccacaaagtgccctgtaacaattcctgaagatcagaaaaaattt
gttgagaaagtagtggaacagatagaagacttattaaagaatgaagaaagtgaaagtttg
gagctggagccatgtacaggatttcaaaggaaattaatttatcagaccttgagctggaaa
tatccaaaaggtatccacgtggaaactctagagtcagataagaaggagagatacattgca
attactaaggtagatgaagaggaacgaaaaagaagagagcagcagaaacaagcaaaagaa
caggaagaattgaatgatgctgtaggattttccagagttgttcatgccatttctaattct
ggcaagcttgttattgggcacaacatgctgctggatgttatgcacaccatacatcagttc
tattgtcccctacctgatgacctaagtgagttcaaggaagtaacatcatgtgtctttcct
cggttactggatactaaactgatggcaagtacacaaccttttaaggagatcattaataat
acatcacttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagtt
gaaagtgcagaaggatttccaagttatgatacagcatctgaacagctccatgaagcagga
tatgatgcttacattactggactgtgcttcatttccatggctaatttcctaggttcattc
ctcagtcctccgaaaaaccatgtgtctgctagatcaaaactcattgaacctttttttaac
aagctatttcttatgagagtaatggacataccgtatctcaatttggaaggaccagacttg
cagcccaaacgagatcatgttcttcatgttacttttcccaaagagtggaagactagtgat
ctataccagcttttcagtgcctttggtaacattcaggtgtcgtggattgatgatacatca
gcctttgtatcattgagccagccagagcaagtaccaatagctgtaaacaccagccggtat
gctgaaagttataggatccagacatatgcagagtatgtggagaaaaaacacgaagaaaaa
caggccaagagaaaatgtacagaagatagttggaaggagatggagaggaagaggttaaaa
acccagtgtacaccttatgtttcccagagtcgatactactgtgttaacagttttacaggt
accagcacagtgggaaagagaagcatgagtcctattgaggaagaaactggttctgacgat
atggaagagggagaaggccaaaatccagaaaatgatcagacagactcctgtgcagattcc
cttccagatggtaagaagagacccaaaaagttgaagaagatcaagacagagcaagttcca
gcaggaagcctcacaactagttccactggaatttttgaggtccctgaaacatggtag
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