KEGG   Frankia alni: FRAAL4283
Entry
FRAAL4283         CDS       T00384                                 
Name
(GenBank) conserved hypothetical protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
fal  Frankia alni
Brite
KEGG Orthology (KO) [BR:fal00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:fal03016]
    FRAAL4283
Enzymes [BR:fal01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     FRAAL4283
Transfer RNA biogenesis [BR:fal03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    FRAAL4283
 Prokaryotic type
   tRNA splicing ligases
    FRAAL4283
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: CAJ62925
RhizoBase: FRAAL4283
UniProt: Q0RHU8
LinkDB
Position
4642063..4643277
AA seq 404 aa
MSPVATLGAAAHPIWLWTRPEEVESAALDQLRNVASLPYIHHHVAVMPDVHLGYGATVGS
VIALRDAVSPAAVGVDIGCGMAAARTNLTAADLPDDLGPLRAALEAAVPVGMTSHREPTA
RARRQDDLWSTFGALHPRVAGRLARAMNQLGTLGSGNHFLEVCLDTDDAVWIMLHSGSRN
VGKELAEGHIRVAKQLEHNAGLADRDLAVFLAGTPEMAAYRHDLDWAQTYARRNRDLMLA
AAVEALRGPLPGLRVPTPPADGPHARDRDFALVNCHHNYVAEEHHFGADVLVTRKGAISA
REGEYGIIPGSMGTRSYLVRGRGNPDSFHSASHGAGRTMSRNRARRTFTVDDLAAQTRGV
ECRKDAGVLDEIPAAYKDIDTVLARQSDLVEIVAQLHAVLCVKG
NT seq 1215 nt   +upstreamnt  +downstreamnt
atgagccccgtcgcgacgctcggcgcagcggcgcatccgatctggctgtggacccggccc
gaggaggtcgagagcgccgcgctggaccagcttcgcaacgtcgcgtccctgccctacatc
catcaccacgtcgcggtgatgcccgacgtgcacctcggttacggcgccacggtcggctcc
gtcatcgccctgcgtgacgccgtctcccccgccgccgtcggggtcgacatcggctgcggg
atggccgcggcgcggaccaatctcaccgcggccgacctgcccgacgacctcggtccgctg
cgggccgcgctggaggcggccgtcccggtcgggatgaccagccaccgggagccgaccgcg
cgggcccggcgccaggacgacctgtggagcacgttcggcgcgctgcacccgcgcgtggcc
gggcggctggcgagggccatgaaccagctcggcaccctcggctcgggcaaccacttcctc
gaggtgtgcctggacaccgacgacgcagtctggatcatgctgcactccggttcgcgcaac
gtcggcaaggagctcgccgagggccacatccgcgtcgccaagcagctcgaacacaacgcc
ggcctggccgaccgcgacctcgccgtgttcctcgccggcacccccgagatggccgcctac
cgccacgacctggactgggcccagacgtacgcccggcgcaaccgggacctgatgctcgcc
gcggccgtcgaggcactgcgcggcccgctgcccgggctgcgcgtgcccaccccgccggcc
gacggcccgcacgcccgcgaccgagacttcgccctcgtcaactgccaccacaactacgtc
gccgaggagcaccatttcggtgccgacgtgctcgtcacccgcaagggcgccatctccgcc
agggaaggggaatacggcatcatccccggttcgatgggaacccggtcctacctggtccgc
gggcggggaaaccccgactcgttccattccgccagccacggtgccggccgcacgatgagc
cgcaaccgggcgcggcggacgttcaccgtcgacgacctcgccgcccagacccgcggggtg
gaatgccgcaaggacgccggcgtcctcgacgagatccccgcggcgtacaaggacatcgac
accgtcctggcccgtcagagcgacctcgtcgagatcgtcgctcagctgcacgccgtgctc
tgcgtgaagggctga

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