Frankia alni: FRAAL4283
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Entry
FRAAL4283 CDS
T00384
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fal
Frankia alni
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fal03016
]
FRAAL4283
Enzymes [BR:
fal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FRAAL4283
Transfer RNA biogenesis [BR:
fal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FRAAL4283
Prokaryotic type
tRNA splicing ligases
FRAAL4283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CAJ62925
RhizoBase:
FRAAL4283
UniProt:
Q0RHU8
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All DBs
Position
4642063..4643277
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AA seq
404 aa
AA seq
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MSPVATLGAAAHPIWLWTRPEEVESAALDQLRNVASLPYIHHHVAVMPDVHLGYGATVGS
VIALRDAVSPAAVGVDIGCGMAAARTNLTAADLPDDLGPLRAALEAAVPVGMTSHREPTA
RARRQDDLWSTFGALHPRVAGRLARAMNQLGTLGSGNHFLEVCLDTDDAVWIMLHSGSRN
VGKELAEGHIRVAKQLEHNAGLADRDLAVFLAGTPEMAAYRHDLDWAQTYARRNRDLMLA
AAVEALRGPLPGLRVPTPPADGPHARDRDFALVNCHHNYVAEEHHFGADVLVTRKGAISA
REGEYGIIPGSMGTRSYLVRGRGNPDSFHSASHGAGRTMSRNRARRTFTVDDLAAQTRGV
ECRKDAGVLDEIPAAYKDIDTVLARQSDLVEIVAQLHAVLCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgagccccgtcgcgacgctcggcgcagcggcgcatccgatctggctgtggacccggccc
gaggaggtcgagagcgccgcgctggaccagcttcgcaacgtcgcgtccctgccctacatc
catcaccacgtcgcggtgatgcccgacgtgcacctcggttacggcgccacggtcggctcc
gtcatcgccctgcgtgacgccgtctcccccgccgccgtcggggtcgacatcggctgcggg
atggccgcggcgcggaccaatctcaccgcggccgacctgcccgacgacctcggtccgctg
cgggccgcgctggaggcggccgtcccggtcgggatgaccagccaccgggagccgaccgcg
cgggcccggcgccaggacgacctgtggagcacgttcggcgcgctgcacccgcgcgtggcc
gggcggctggcgagggccatgaaccagctcggcaccctcggctcgggcaaccacttcctc
gaggtgtgcctggacaccgacgacgcagtctggatcatgctgcactccggttcgcgcaac
gtcggcaaggagctcgccgagggccacatccgcgtcgccaagcagctcgaacacaacgcc
ggcctggccgaccgcgacctcgccgtgttcctcgccggcacccccgagatggccgcctac
cgccacgacctggactgggcccagacgtacgcccggcgcaaccgggacctgatgctcgcc
gcggccgtcgaggcactgcgcggcccgctgcccgggctgcgcgtgcccaccccgccggcc
gacggcccgcacgcccgcgaccgagacttcgccctcgtcaactgccaccacaactacgtc
gccgaggagcaccatttcggtgccgacgtgctcgtcacccgcaagggcgccatctccgcc
agggaaggggaatacggcatcatccccggttcgatgggaacccggtcctacctggtccgc
gggcggggaaaccccgactcgttccattccgccagccacggtgccggccgcacgatgagc
cgcaaccgggcgcggcggacgttcaccgtcgacgacctcgccgcccagacccgcggggtg
gaatgccgcaaggacgccggcgtcctcgacgagatccccgcggcgtacaaggacatcgac
accgtcctggcccgtcagagcgacctcgtcgagatcgtcgctcagctgcacgccgtgctc
tgcgtgaagggctga
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