Rhodobacteraceae bacterium SC52: G5B39_03580
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Entry
G5B39_03580 CDS
T06457
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
faq
Rhodobacteraceae bacterium SC52
Pathway
faq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
faq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5B39_03580 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
faq03019
]
G5B39_03580 (pnp)
03016 Transfer RNA biogenesis [BR:
faq03016
]
G5B39_03580 (pnp)
Enzymes [BR:
faq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
G5B39_03580 (pnp)
Messenger RNA biogenesis [BR:
faq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
G5B39_03580 (pnp)
Transfer RNA biogenesis [BR:
faq03016
]
Prokaryotic type
tRNA degradation factors
G5B39_03580 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
Motif
Other DBs
NCBI-ProteinID:
QIE41127
UniProt:
A0A858CJI1
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All DBs
Position
complement(724204..726336)
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AA seq
710 aa
AA seq
DB search
MFDVKTKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKAKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVSGFKHEVLVMCTVLSH
DLVNDPDIVAMIAASAALTISGVPFMGPIAGCRVGYEGGEYVLNPELDDMQDLRTKPDQR
LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQLKPVVDLIVSLAEEAAKDPFDFQ
APDYSELYATVKSLGEEQMRAAFAISDKQARTTAVSDARAAILAGLTEEQSEDANLGSAL
KKLEASILRGDVVRTGKRIDGRNLDQVRQIVSEVGILPRTHGSALFTRGETQGLVITTLG
TGDDEQFIDALHGTSKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLILEDDGQYA
VLTDILGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPQIMEKALEQAKAGRLHILGE
MNKALTAPSGFSEYAPKIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGVIKI
ASSDADAIKRAYDMIYSIVAEPEEGKIYKGKVVKLVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMRVVDQATGEPAKEDEQTD
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgttaaaacgaaatcgatgcaatggggggaggaaaccctcacccttgaaact
ggcaaagtagcccgtcaagcagacggctccgtgatcgcaacgcttggggaaaccagcgtt
atggcgaacgtgacctttgccaaaaaggccaagccggggcaggacttcttcccgctgacc
gtccactaccaagaaaaatactatgcggccggcaaagtgcccggcggctttttcaagcgc
gaagcgcgcccttccgaaaaagaaacgctgaccgcgcgcctgatcgaccgtccgattcgc
ccgctgttcgtctctggcttcaaacatgaagttctggtgatgtgcaccgtgctgagccat
gatctggtcaatgatcccgacatcgtggcgatgattgccgcgtcggccgcgctgaccatt
tccggcgtgccgttcatgggcccgatcgccgggtgccgcgtggggtatgaaggtggcgag
tacgtcctgaaccccgaactcgacgacatgcaggatctgcgcaccaagcctgatcagcgg
ctcgaccttgttgtggcaggcacaaaagacgccgtcatgatggtggaatcggaagcctac
gagctgaccgaagaagagatgctgggcgccgtgactttcgcccatgagcaactcaagccc
gttgttgatctgatcgtatcgctcgccgaagaagccgcgaaagatccgttcgatttccaa
gcccccgactacagcgaactgtacgcgaccgtgaaatcgctgggcgaagagcagatgcgc
gccgctttcgcgatctctgacaagcaggcacgcaccacagccgtttctgatgcgcgcgcc
gcgatccttgcgggtctgaccgaagagcaaagcgaagatgccaaccttggctccgcgctg
aaaaagctcgaagcatcgatcctgcgcggcgacgttgttcgcacgggcaagcggatcgac
ggtcggaacttggatcaggttcgtcaaatcgtgtccgaagttggtatcctgccccgcaca
cacggctctgccctgttcacgcgcggcgagacgcagggccttgtgatcacaacactgggc
accggcgatgatgagcagttcatcgacgccctgcacggcacgtccaagtcgaacttcctg
ctgcactacaacttcccgccgtattcggttggcgaagctggccgcgttggtcctccgggt
cgccgcgagatcggccacggtaaactggcatggcgtgcgcttcaggctgttctgcccgcg
gcaaccgacttcccctacactatccgcatcgtttccgagatcacggaatcgaacggctct
tcgtccatggcgtccgtttgtggcggttcgctgtcgatgatggatgcgggcgttccgctc
aaggcggcggttgccggtgtggccatgggcctgatcctcgaagatgacggacagtatgcg
gttctgaccgacattctgggcgacgaagatcaccttggcgatatggacttcaaggtcgca
gggaccgagaagggcatcacgtcgcttcagatggacatcaaggttgcgggcatcacgccg
cagatcatggaaaaggcactcgagcaggcgaaagccggtcggttgcacatccttggtgag
atgaacaaagccctgactgcaccgtctggcttcagcgagtatgcgccgaagatcgaaacg
atgcagatcccaaccgacaagatccgtgaagtgatcgggtcaggcggtaaggtcattcgc
gaaatcgtggaaacctcgggtgccaaagtcgacatcaacgacgacggcgttatcaagatc
gcgtccagcgatgcagatgcgatcaagcgcgcctatgacatgatctattccattgtggcc
gagccagaagaaggcaagatctacaaaggtaaggttgtgaagctcgttgatttcggcgcg
ttcgttaacttcttcggcaagcgtgacgggctggtgcatgtcagccagatcgaaaaccgt
cgcttgaaccatccttcggacgttctgaaagaaggccaagaagtctgggtcaagctgctt
ggcttcgacgatcgcggcaaggtgcgtctgtccatgcgcgttgtggatcaggcaaccggt
gagccagcgaaagaagacgaacagaccgactaa
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