Fictibacillus arsenicus: ABE41_016125
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Entry
ABE41_016125 CDS
T04452
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
far
Fictibacillus arsenicus
Pathway
far03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
far00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABE41_016125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
far03019
]
ABE41_016125
03016 Transfer RNA biogenesis [BR:
far03016
]
ABE41_016125
Enzymes [BR:
far01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABE41_016125
Messenger RNA biogenesis [BR:
far03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABE41_016125
Transfer RNA biogenesis [BR:
far03016
]
Prokaryotic type
tRNA degradation factors
ABE41_016125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
HTH_IclR
RNase_II_C_S1
HTH_12
TFIIE_beta
HTH_5
CCDC32
Motif
Other DBs
NCBI-ProteinID:
ANX13538
UniProt:
A0A1B1Z7T5
LinkDB
All DBs
Position
complement(3150289..3152607)
Genome browser
AA seq
772 aa
AA seq
DB search
MDKLQILQLMKESEKPMTVTEIEEALQLPDAEAFKELVLTLNQLEDEGSVVRTRTNRYGL
PEKMSLIKGRVQGHAKGFAFLIPEDSEQKDVYISQSDMNGAMSGDTVLVRLNNTSSGSRP
EGTIIRILERGVTEVVGTFQESRRFGFVVADDKRIPNDIFIPAEGVNGAVEGHKVVVKIT
KYPEGRNSAEGEIIHIIGHKNDPGVDIISVIFKHGLPREFPEEALEQAHNTPDEIDPKDI
EGRRDLRNETIVTIDGADAKDLDDAVHVIKLPNGHYKLGVHIADVTHYVTEESAIDKEAR
ERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTISCEMEINHDGEVIKHDIFPSVIKT
TERMTYSDVRKILQDEDEEVSKRYEPLIPFFKLMGELAEVLRKKRFARGAIDFDFSEAKV
LVDENSDPQDVVLRERSVAEKLIEEFMLCANETVAQHFHELELPFMYRIHEDPDEGKLER
FLEFIGMFGYALKGSASDIHPRSLQQLLETVRGEPEEMVISKIMLRSMKQAKYDHMSLGH
YGLATEFYTHFTSPIRRYPDLIVHRLIRTYLFEKDTGPKTVSHWKAELPGIAKHSSGMER
RAVDAERETDELKKAQFMLDKVGEEFDGVISSVTNFGLFVELPNTIEGLVHVSYLTDDYY
RFDEKFMAMIGERTGNVFRIGDEISIRVVNVNVDERAIDFEIVGMKGTPRKRHKDRQQVI
DIGDTPKRGRGRRSKSRNSESDRSSGPQDSKKGKKKPFYKPVAKKKGKKKKK
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
ttggataaactgcaaatactccagctcatgaaagaatcggaaaagccgatgacagtaacc
gagattgaagaagctcttcaactgccggatgctgaagctttcaaagaactggttttaaca
cttaaccaactggaagatgaaggttcggtagtcagaacacgaacgaaccgttacggtctt
ccagaaaaaatgagcctgatcaaagggcgcgtacaagggcatgcaaaaggttttgcgttt
ttaatccctgaagacagcgaacaaaaagatgtgtatatctctcaatcagatatgaatggt
gcgatgagcggtgataccgttctagtccgtttaaacaacacctcttcaggttcacgtcca
gaaggaacgattatccgcattttagagcgcggcgtaactgaagtagtcggtacattccaa
gaaagccgcaggttcggttttgtggtggctgacgacaaacgaatcccgaatgacatcttc
attccagcagaaggcgtgaacggtgctgtagaaggacataaagtcgttgtgaaaataacg
aaatacccagaaggccgaaacagtgctgaaggtgagatcatccatattatcgggcataaa
aatgatccgggtgtggacattatctctgttatttttaagcacggactgccaagggaattc
cctgaagaagcattagaacaagcgcacaatacgccagacgaaatcgatccgaaagatatt
gaaggacgccgcgatcttcgaaatgaaacgatcgtgacgattgatggagctgacgcaaag
gacttggatgacgcagttcatgttataaaattgccgaacggtcattataagcttggcgtt
catattgctgatgttactcactatgtaacggaagagtcagcaatcgataaagaagcacgt
gaacgaggtacgagtgtgtacttagtagaccgggttatcccgatgattccacatcgtcta
tcaaatggaatatgttcattgaacccgaaagttgaccgtttgacgatctcttgtgagatg
gaaatcaatcatgacggtgaagtaattaaacacgatatcttcccgagtgtcattaaaaca
acagaacgaatgacttattcagacgtccgtaaaattttgcaggatgaagatgaagaagtt
tctaagcgctatgagcctttaattccattctttaagctgatgggcgagctggcagaagtt
ttacgtaaaaaacgttttgcccgcggtgcgattgactttgatttttcagaagcaaaagtt
ctagtagatgaaaatagcgatccgcaggatgtcgttctgcgtgaacgttcagttgctgaa
aagctgatcgaggaatttatgctttgtgccaacgaaaccgttgctcagcatttccacgag
ctggagcttccgttcatgtatcgtatccacgaagatccagacgaaggcaagcttgaacga
ttcttggaatttatcgggatgttcggttacgcattaaaaggttctgcgagcgatattcat
ccgcgcagtcttcagcagcttctggaaacagttagaggcgagccagaagagatggttatc
agcaagatcatgcttcgttccatgaaacaggcgaaatacgatcatatgtcactgggccac
tatggcttagctactgaattctatactcatttcacttcgcctatccggcgttatcctgat
ttaatcgttcacagattgatccgtacgtatctgtttgaaaaagatacaggtccaaaaacg
gtaagccactggaaagcagagctgccgggtatcgcaaagcactcttcaggaatggaacga
cgtgctgttgatgctgaacgtgaaacggacgaactgaagaaagcacagttcatgcttgat
aaagttggggaagagtttgatggcgtgatcagttctgttacaaacttcggcctttttgtc
gagctgccgaacacaatcgaaggacttgtgcatgtcagctacttaacagacgattattat
cgttttgatgagaagtttatggccatgatcggagagcgcacaggtaacgtgttccgaatc
ggtgacgagatttcaatccgggttgtgaacgtaaacgttgatgagcgcgcgattgatttt
gaaatcgtcggtatgaaaggaacaccacgcaagcgtcataaagaccgccagcaagtcatt
gatatcggtgacacaccaaaacgaggacgaggaagacgcagcaagagccgtaatagtgag
tctgatcgttccagcggccctcaggattctaaaaagggcaagaaaaagccgttttataag
cctgtggctaaaaagaaaggcaagaaaaagaagaaataa
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