KEGG   Flavobacteriaceae bacterium 3519-10: FIC_01168Help
Entry
FIC_01168         CDS       T00953                                 

Definition
(GenBank) ATP-dependent DNA ligase family protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fba  Flavobacteriaceae bacterium 3519-10
Pathway
fba03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fba00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FIC_01168
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fba03400]
    FIC_01168
Enzymes [BR:fba01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FIC_01168
DNA repair and recombination proteins [BR:fba03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FIC_01168
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2 mRNA_cap_enzyme G-gamma
Motif
Other DBs
NCBI-ProteinID: ACU07618
UniProt: C6X5D0
LinkDB All DBs
Position
complement(1251232..1253100)
Genome map
AA seq 622 aa AA seqDB search
MLCGTADKPFSSSDWAFEIKWDGYRAVADTRNGIQLYSRNGLSYLEKFRKITNSLKLQNH
EMVIDGELVAYDDKGKPNFQWLQRIGENPNLTVIYQVFDLLWLNGHSTENMNLLQRKELL
KEALVETEFIKYHDHVVEKGEDFYRLVESLELEGMIAKKIESTYQPGLRSGDWLKIKSLQ
TEEVLICGFTAPKGGRKKFGSLILGRYLGGELVFCGHTGTGFSDKILVELHKKMEPLIIS
DSPFEKIPKTNEAATWIKRELVAEIKFTELTDDHIFRHPVFMRLRDDINPKDLSFKEEPK
AENNEVPDTVPIKKPAVKRENEQLKKIGKQEVKITNQNKIYFPKDGVIKGDVISYYQSVA
DYILPYLKSRPQSMNRFPNGIDGMSFYQKDASDEIPSWIETEKVHSESNDKMINYILCNN
EATMAYLNNLGCIELNVWTSRVETIDKPDYLVLDLDPSDNNTFEDVIETAQVVKKIMDKG
KIDGYCKTSGSSGIHIYIPAGAQYSFDQVKDFAHLMMQMVQQELPDITTLERTLQKRDKG
KIYLDYLQNRRGQTLASVYSLRPKNGAPVSMPIEWDELKIGLKPTDFNIENAMERLKTKG
DLFKPVLGKGFDMLTAIDLLAK
NT seq 1869 nt NT seq  +upstreamnt  +downstreamnt
atgctctgcggaacagcggacaagccattcagttcctccgactgggcttttgagattaaa
tgggacggctaccgcgccgtcgccgacacgcgcaacggtattcagctttattcgcgaaac
ggactctcctaccttgagaaattcaggaaaataacaaattcattaaagcttcaaaatcac
gaaatggtgattgacggtgaactggttgcgtatgacgataaaggcaaacccaatttccag
tggctgcagcgcattggcgaaaacccaaacctgaccgtaatttatcaggtttttgatttg
ctttggctgaacggacattccaccgaaaacatgaatctgcttcagcgcaaggagttgctt
aaagaagctcttgttgaaacagaatttattaaatatcacgatcatgttgtagaaaaaggc
gaagatttctacaggcttgtcgaaagtttggagcttgaaggcatgatcgcaaaaaaaatt
gaaagcacctatcaacctggcctgcgaagcggcgactggctgaagataaaaagcctgcag
accgaagaagtactgatctgcgggttcacggcaccgaaaggcggccgcaaaaaattcggg
tcacttattttaggccgttatctgggcggtgaattggttttctgtgggcacacgggcacg
ggtttcagcgacaagatacttgttgaacttcataagaaaatggaaccgctgatcatttcg
gattcgccattcgaaaaaattccgaaaacgaacgaagcggcgacctggataaaacgtgag
cttgtcgccgaaattaaattcaccgaactcaccgacgatcatattttcagacatcccgtg
tttatgcgccttcgcgatgatatcaacccaaaagatttatccttcaaagaagaaccaaag
gcagagaataatgaagttcctgacactgtacccattaaaaaaccggctgtgaaacgcgaa
aatgagcaactcaaaaaaatcggaaagcaagaagtaaaaattacgaaccagaataaaata
tattttccaaaagacggcgttatcaaaggcgacgtgatttcgtattatcaaagtgttgca
gactatattctgccctatctcaagagccgtccacaatcgatgaaccgcttcccgaacggc
atcgacggcatgagtttctaccagaaagacgcgtcagacgaaataccctcatggatcgaa
accgaaaaagtgcattcggaatccaacgacaagatgatcaactacatcctttgcaataac
gaagcgacgatggcctacctcaataatctgggctgtattgaacttaatgtgtggacgagc
cgcgttgagactattgataagccggattatctcgtgctcgatcttgatccttccgataac
aacacgttcgaagacgtcatcgaaaccgcgcaggttgtaaaaaaaatcatggataaagga
aagattgacggctactgcaaaacgtcgggctcgtccggcattcatatttacattccggca
ggcgcgcagtattcatttgatcaggttaaagatttcgcgcatctgatgatgcagatggta
cagcaggaacttcccgatatcactacgctcgaacgcacgctgcagaaacgcgacaaaggc
aagatctacctcgattatctgcagaaccggcgcggacagacacttgcgagcgtgtacagt
ctgaggcccaaaaacggtgcgccggtctcgatgccgattgaatgggacgaacttaaaatt
ggccttaagcccacggatttcaatatagaaaatgcaatggaaaggctcaaaaccaaaggt
gatctgttcaaacctgtgctcggcaaaggattcgatatgctgacggcgattgaccttttg
gcaaaataa

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