KEGG   Flavobacteriaceae bacterium UJ101: UJ101_01740
Entry
UJ101_01740       CDS       T04720                                 
Name
(GenBank) DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
fbu  Flavobacteriaceae bacterium UJ101
Pathway
fbu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fbu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UJ101_01740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fbu03019]
    UJ101_01740
   03400 DNA repair and recombination proteins [BR:fbu03400]
    UJ101_01740
Enzymes [BR:fbu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     UJ101_01740
Messenger RNA biogenesis [BR:fbu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     UJ101_01740
DNA repair and recombination proteins [BR:fbu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      UJ101_01740
SSDB
Motif
Pfam: RQC DEAD Helicase_C HTH_40 HRDC RecQ_Zn_bind ResIII Helicase_Sgs1 zf-CXXC PcfK
Other DBs
NCBI-ProteinID: APD07251
UniProt: A0A1J0LN77
LinkDB
Position
1949297..1951405
AA seq 702 aa
MISESTLLKSLKNHFGFEKFRPNQLQIIQSILSGKDNLVIMPTGGGKSICFQLPALHLEG
VTLVISPLIALMKDQVDALKGNGIAAAYYNSSQTSEEQRVIFEQVIQKQLKLLYVAPESL
PLLDNLLNENYLSLIAIDEAHCISAWGHDFRPSYTQLNFLKETLPTIPIVALTATADKAT
REDICTQLKLQNPVKNITSFDRKNLSLEVRPANDRVNQIVRFIENRSDESGIIYCLSRKT
TEQLANKLNQKGFEAVAYHAGLSYEERSKSQEDFIYDRTKIVCATIAFGMGIDKSNVRWV
IHYNLPKNIEGYYQEIGRAGRDGLESDTLLFYSYADVVQLQKFSEGASNQEVQIAKLNRM
RQYAEATSCRRKILLSYFGELIEENCGNCDVCQNPPQFLDGTVIAQKALSAVYRLKEKEA
MGTVVDVLRGARNAVVLDKGYTQLKTYGVGQEISWQNWQHYIIQLINQGYLEIAFHENNI
LKLTDFSKKVLFEKEHVQLSQAISYKEKTKTTKAKVEKKKSKTDLYERLRLLRLKIAKEE
DVPAYIVFNDATLKDMEQKRPMTDEAFLEVEGIGKHKLEKYGYDFITEIIAFHKEKKGTR
KKAGDTVLKTYELYQKGFSMEDISVERGLSIPTIFSHIIKLYQESKKIEVHDFISEYELE
EIKKAKKELKNPRQLKPYFEYFNEQMDYFTIRFGLEVLKKNY
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgatatcagagtctaccttattaaaaagcttgaaaaaccatttcggatttgaaaaattc
cgtcccaatcaattgcaaataattcaatctattttaagtggaaaagataatttagttatt
atgcctactggaggtggaaaatctatttgttttcaattaccagctttgcatttagaaggt
gtaactttagttatttctcccttgattgctttaatgaaagatcaagtagatgctttaaaa
ggaaatggtatagcagctgcatattataatagttcccaaaccagtgaagaacaaagggtg
attttcgagcaagtcattcaaaaacaattaaaattattgtacgtagctcccgaaagttta
ccactcttagataatcttttaaatgaaaattacctttctttaattgctattgatgaggcg
cactgtatttcagcatggggacatgattttcgccctagttatactcaattaaacttttta
aaagagacattacctactatcccgattgtagccttgacagcaacagctgataaagctaca
cgagaagatatttgtacacaattgaaattacaaaatcccgttaaaaatattacttctttt
gatcgaaagaatttgagcttagaagttcgaccggcaaatgatcgagttaatcaaattgtg
cgttttattgaaaatagatcggatgaatcgggtattatttattgtttaagtagaaagact
acagaacaattagccaataaattaaatcaaaaaggatttgaagcagttgcttatcatgct
ggcttatcatatgaagaaagaagtaaatctcaagaagattttatttacgatcgtacaaaa
atagtgtgtgcaactattgcttttggaatggggattgataaatcgaatgttcgttgggta
attcattataacttaccaaaaaatatagaaggatattatcaagaaattggacgtgcggga
cgtgatggattagaatcggatacgctgcttttttatagttatgctgatgtggttcaatta
caaaaatttagtgaaggagcaagtaatcaagaagtacaaattgcgaagctaaatcgtatg
cgacagtatgcagaagctacaagttgtcgtagaaaaatattgttgagttattttggagaa
ttaattgaagaaaattgtgggaattgtgatgtttgtcaaaatccaccacaatttctcgat
ggaaccgttattgcacaaaaagcattatctgcagtatatcgtttaaaagaaaaagaagca
atgggaactgtagtagatgtattaagaggagctcgaaatgcagtagttttagataaaggt
tatactcaattaaaaacctatggagtaggacaagagatttcatggcaaaactggcaacat
tatatcattcagttaattaatcaagggtatttagaaattgcgtttcatgaaaataatata
ttaaaactaacagatttttcgaaaaaagtgttatttgagaaagagcacgtacaattatct
caagcaatttcttacaaagagaagactaaaaccacaaaggctaaagttgaaaagaaaaaa
tccaaaacagatttatatgaacgattacgtttgttacgtttgaaaatagccaaagaagaa
gatgtacctgcttatattgtttttaatgatgcaacattgaaagatatggaacaaaaacgc
ccaatgacagatgaagcatttttagaagtggaaggtattggaaaacataaattggaaaaa
tatggttatgactttattacagaaatcattgcttttcataaagaaaaaaaaggaactagg
aagaaagctggtgatactgttttaaaaacatacgaattgtatcaaaaaggtttttcaatg
gaggatatttcagttgaaagaggactaagtatacctacaatattttctcatattataaaa
ttatatcaggagagtaaaaagattgaggtacatgattttatttcagaatatgaacttgaa
gaaattaaaaaagctaaaaaagaattaaaaaatccaaggcaattaaaaccttattttgaa
tattttaatgaacaaatggattatttcactattcgatttggattagaagttttaaagaag
aattattga

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