Ferrovibrio terrae: FNB15_13815
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Entry
FNB15_13815 CDS
T06089
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fer
Ferrovibrio terrae
Pathway
fer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNB15_13815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fer03019
]
FNB15_13815
03009 Ribosome biogenesis [BR:
fer03009
]
FNB15_13815
Enzymes [BR:
fer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FNB15_13815
Messenger RNA biogenesis [BR:
fer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FNB15_13815
Ribosome biogenesis [BR:
fer03009
]
Prokaryotic type
rRNA processing factors
FNB15_13815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF5351
Motif
Other DBs
NCBI-ProteinID:
QDO98280
UniProt:
A0A516H3V9
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All DBs
Position
2840090..2843119
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AA seq
1009 aa
AA seq
DB search
MGMRMLIDATHPEETRVVVVKGTRLEEFDYETSTKQVNKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPIADRQALLAQQAEEEAAAAAAEEAELAAEEVRAARRAA
QQQARAAEQANDPAHDQTHDHDAGDNGVESVDGDYDTVEEIVSDAAPADAPADAPGDVPA
AEPVAEAAVAAEPAAVPAAQEETTDQAAVQADAPVAEAAEETSAAPAYWNVPHAAAPVST
LTAPVEDDDAAEAGEHHDEDHHHDGHHDDHHHHDDAHGEDGHADEKENGKSDESDEGRAR
RRRTNVFRRYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGG
ISRKIQSQADRKRLKAITAELDIQDGMGVIVRTAGMERSKPEIKRDFEYLLRSWDSIRER
TLESSAPALIYEEAGLIKRSIRDLYSDQIDEVIVEGEEGYRFAHDFMQMLMPNHADNVKQ
YQDKIPLFTRYQVEQQLDAMFSPTVQLKSGGYIVINPTEALVSIDVNSGKSTREHNIEET
AYKTNLEAAEEVARQLRLRDLAGLVVIDFIDMEENRNIRKVEQKLKECLRNDRARIQVGR
ISGFGLLEMSRQRLRPSLLESSTMPCPHCQGRGYVRSIESTALTVLRAIEEEGIRDRSAE
ITVAMSAEVALYLLNHKRDRIGDMERRYVMRVILAADPSLVPPDFRIERSKTRQPGDVSR
PEVARSESQRPLTQESAYASDAEDGEADETETENTTEAGAAAGEENGENADGRGRRRRRR
RRRGGRGREDGVSAEGAEGAEDAEGEGAEDAEGEAAEGDESGDQGTETGVEGANADGASA
DGEGPDGDGRRRRRGRRGGRRRRGREDGAEAGGERQPGERQGERPARAERAPREDRPRRD
VPNYGVTENPMTPASIGAMLDGVPEFDFGDDLPPLPSKQAAPVPQQAVEHAPEALKQADV
PPVSVPEAKSAEPAPAPTGPVFETTVIAPDGSADKPAEPAPAKKGWWRR
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgggcatgcgtatgttgattgatgcgactcatccggaggaaacccgggttgtggtcgtg
aagggtactcggctcgaagagttcgattacgagacctccaccaagcaggtgaacaagggc
aatatctatcttgcgcgggtcacccgcgtggagccctcgttgcaggccgctttcgttgaa
tacggcgggaaccgtcacggcttcctagccttcagcgaaattcatcccgactattatcag
atcccgatcgcggatcgtcaggcactgctcgcacagcaggccgaggaagaggccgctgct
gccgctgccgaggaagccgaactggctgccgaggaagtgcgtgccgcgcgtcgtgccgcc
cagcagcaggcccgcgccgctgaacaggccaatgacccggcccatgatcagactcatgat
cacgacgccggcgacaatggcgtcgagagtgtcgatggcgactacgacacggtggaggag
atcgtctctgatgccgcgccggcagacgcaccggccgatgctccgggcgatgtgccggct
gctgagccggtcgctgaagccgcagtcgctgccgagccggccgctgttccggccgcgcag
gaagagaccactgaccaggctgcggtccaggccgatgctccggttgctgaagccgccgag
gaaacttccgcggcgccggcctactggaatgtgccgcatgccgcggccccggtctcgacc
ctgaccgcacctgtggaagacgatgatgccgccgaagcgggcgagcatcacgacgaagat
catcatcacgacggtcatcatgacgatcaccatcatcatgacgatgcccatggcgaagac
ggccatgcggacgagaaggaaaacggcaagagcgacgagagcgacgaaggtcgcgcgcgc
cgccgccgcaccaacgtcttccgtcgttacaagattcaggaagtgatcaagcgccggcag
atcatgctggtgcaggtcgtgaaggaagagcgcggcaacaagggcgcggcgctcaccacc
tatctctcgctcgccggccgctattgcgtgctgatgcccaacaccgcgcgtggcggcggc
atctcgcgcaagatccagtcccaggccgaccgcaagcgtctcaaggcgatcacggcggag
ctggatatccaggacggcatgggcgtgatcgtgcgcaccgccggcatggaacgctccaag
ccggagatcaagcgcgatttcgaatacctgctgcgcagctgggacagcatccgcgagcgc
acgctggaatcctcggccccggccctgatctatgaagaggccggtctgatcaagcgttcg
atccgcgacctctattccgaccagatcgacgaagtgatcgttgaaggtgaggaaggctat
cgcttcgcgcatgacttcatgcagatgctgatgcccaatcacgccgacaacgtgaagcag
tatcaggacaagatcccgctgttcacccgctaccaggtcgaacagcagctcgatgcgatg
ttctcgccgaccgtgcagctcaagtcgggcggctacatcgtcatcaacccgaccgaagcg
ctggtctccatcgacgtgaactcgggcaagtcgacccgcgaacacaatatcgaggaaacc
gcctacaagaccaacctggaggcggctgaagaagtcgcccgccagctgcgcctgcgcgat
cttgccggcctcgtcgtgatcgatttcatcgacatggaagagaaccgcaacatccgcaag
gtggagcagaagctgaaggaatgcctgcgcaatgatcgcgcgcgcattcaggtcggccgc
atctccggcttcggcctgctcgagatgtcgcgccagcgcctgcgtcccagcctgctggaa
agctcgaccatgccctgcccgcattgccagggccgcggctatgtacgttcgatcgagtcc
accgcgctgaccgtgctgcgtgccatcgaggaagagggtatccgtgaccgctcggccgag
atcaccgtcgcgatgtcggcggaagtggcactctatctgctcaaccacaagcgcgaccgc
atcggcgacatggaacgccgttacgtgatgcgcgtgatcctggcggccgatcccagcctg
gtgccgccggacttccgcatcgagcgcagcaagacgcgccagcccggtgatgtgagccgc
cctgaagtggcacgctccgagagccagcgcccgctgacccaggaaagcgcctatgccagc
gacgccgaggatggcgaggctgacgagactgaaaccgagaacacaactgaggccggcgct
gctgctggcgaagaaaacggcgaaaacgccgatggccgtggtcgccgccgccgccgccgc
cgccgtcgtggcggtcgcggccgcgaagatggtgtgagtgcggaaggcgccgagggcgcc
gaggatgccgaaggcgaaggcgccgaggatgccgaaggcgaagctgccgaaggcgatgag
tccggcgaccagggcaccgaaaccggtgtcgagggtgccaatgctgatggcgccagtgct
gatggcgaaggccctgatggtgacggccgtcgccgtcgccgtggccgtcgcggcggtcgc
cgccgtcgcggtcgtgaggatggtgctgaagctggcggtgaacgccagccgggcgagcgc
caaggtgagcgtccggcgcgtgccgaacgcgcaccgcgcgaagaccgtccgcgccgcgat
gtccccaactacggtgtgaccgaaaacccgatgacgcccgcgtcgatcggggcgatgctg
gatggtgtgccggaattcgatttcggcgacgacctgccgccgctgccgtcgaagcaggct
gcgcctgtgccgcagcaggccgtcgagcatgcgccggaagcgctgaagcaggcggacgtg
ccgccggtcagtgtcccggaagcgaagtcggccgaaccggcgcctgcgccgaccggtccg
gtctttgaaaccactgtgatcgcgcccgatggcagcgccgacaagcctgctgaaccggca
ccggccaaaaaaggctggtggcgccggtga
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