Fimbriimonas ginsengisoli: OP10G_3915
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Entry
OP10G_3915 CDS
T03038
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fgi
Fimbriimonas ginsengisoli
Pathway
fgi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OP10G_3915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fgi03400
]
OP10G_3915
Enzymes [BR:
fgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OP10G_3915
DNA repair and recombination proteins [BR:
fgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OP10G_3915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
GCP5-Mod21_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIE87283
UniProt:
A0A068NUR3
LinkDB
All DBs
Position
complement(4293489..4297127)
Genome browser
AA seq
1212 aa
AA seq
DB search
MRTAEWARRLADLPGLQDILADSTQASQWRSVAYEARPVLLAASYLKHPRKMLVVTANYE
RALAWQAKLQICGVSPDNISQLPSGQSQLFEDAAPEHIALSDRLGALRTLACDDPCIVLA
SPGAALERTLPKDVLLDAFVKIQPGDTINPAKFLKQLIALGYEHQEPVRLPGQFSQRGGI
IDVYATGRDLPIRVELFGDEVESIRRFDPNNQRSVGKLNSLELSPSRETLFAGHDSGIAD
LILSTMEREASTLSDESAERLRELIAEDVEALSQGVYFDRLDLYRPILHPDSGCAIDLLG
EEDLLVLDEPLELETVVTRAEDELAVALDARAERGEILRSPAVDFILPPEHLATHPKTLA
LSAMNAFPEWADLPRKIEVNALSLDSYRGRAEALALTLRNYQKQKFTLVFTTDQPNRAKT
VLSQAEIFASAESEAFEASEIEGLETKSFPQTILAQGNLGGGFVLPDHKLAYISDAELFG
VARLRLPQKRFMEGAPIATVLDLKPGDFVVHINFGIGIFRGLVNKTIEGVEKEFLYVEYQ
APDKLFVPADQLDRIQKYLNPGDQQPKLNKLTGGEWQRTLGKAKEEAKAFARDLVKLYAQ
RKQVMRKPYGPDTPFQHEMESTFPWVETRSQMQAIRDAKNDMNEPFPMDRLVCGDVGFGK
TEVAIRAAFKAVQAGRQVAILCPTTILSEQHYRSFLDRLGSFGSQIDIINRFTSTAEKKE
ILARIKSGKAEVVVGTHALLGQGIEFKDLGLVVIDEEQKFGVKQKEMLKNLRTQVDVLTL
SATPIPRTLSMALMDIRQMSLINDPPPGRLPVRTFVRPYAGEVIREAILRELARGGQVFY
VYNRVESIHHVEEKLRKLVPMARIGVGHGQMHEKELEPIMVGFIKGEIDVLLSTTIVESG
IDIPNANTLIVEQSDRLGLAQLYQLRGRVGRSDRQAYGYFLYSGALDATIRAGLVDAQPN
VPLPGKRKKLTVTEGALQRLQALQEFSNLGAGYSLAFRDLQIRGAGELLGAKQSGTMVSV
GYELYTQLINEAVAMLKNTVDGTPVSPDDEVRDPLESLTPLPAFEVPVIALIPEAYIKDQ
AQRLYYYQRMMSSRDEATLGEVQAEVEDRYGHPPLQVGQAFAIMGQRLRARRLGFEKLDA
RQGRIAITFKDRSTVPPMVFSVLAKRNREAYVTREQYIWPYQGAPIPAIDRMMDEFESAL
QHVESSRASLRQ
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgcggaccgccgaatgggcgaggcggcttgccgacctccccggccttcaggacatcctc
gcagactcaacgcaggcatcgcaatggcgctccgtcgcctacgaggcccgtccggtgctg
cttgccgccagctacctaaagcatccgcgaaagatgctcgtggtcaccgccaattacgag
cgcgcgctcgcttggcaggcaaagctccagatctgcggcgtcagcccggacaacattagc
cagcttccttccggacaatcgcagctcttcgaggacgccgctccagagcatatcgccctt
tccgaccggctcggcgccctccgtacgctcgcctgcgatgacccttgcatagtcctcgcc
tcccccggcgcggcgcttgaacggacgctgccgaaagacgtattactcgacgccttcgtc
aagatccagcccggcgacacgatcaatccggcaaagtttctcaaacagctcatcgcgctc
gggtacgagcaccaagaaccggtccggttgccggggcagttctcgcaacggggcggaatc
atcgacgtttacgccaccggccgcgacctcccgatccgagtggagctcttcggagacgaa
gtcgaatcgatccggcggttcgatccgaacaaccagcggtcggtcggaaagctgaactcg
ctggagctttcccccagccgagaaaccctcttcgccggtcacgattccggaatcgccgat
ctaatcctctcgacgatggagcgagaagcgagcaccctctccgacgaatccgccgagcgt
ctacgcgagctgatcgccgaagacgtggaagcgctcagccagggcgtgtacttcgaccgg
ctcgacctgtaccggccgatcttgcacccggattcgggttgcgcgatcgacctccttggc
gaagaggatctgcttgtgctggatgagccgctagagctggagaccgtcgtcacccgggcc
gaagacgagctggcggtggcgctggacgcccgtgccgagcgcggcgaaatcctccgatcg
ccggccgtggacttcattctcccacccgaacacttggccacccatccgaagacgctcgcc
ctcagcgcgatgaacgccttcccggagtgggccgacctgccgcgcaagatcgaagtcaac
gccctctcgctcgactcgtaccgcggccgcgccgaagcgttggcgctgacgctgcgcaac
taccagaaacagaaattcaccctcgtcttcacgaccgaccagcccaaccgagccaagacc
gtcctctcccaagcggagatcttcgcatccgcggaatccgaggcgttcgaagcgagcgaa
atcgaaggtctcgagaccaagtctttcccccaaacgatcctcgcccaaggaaatctgggc
gggggcttcgttcttcccgaccacaagctggcgtacatttcagacgccgagctgtttggc
gtcgcccgcctccgtcttccgcaaaagcggttcatggagggtgcgccgatcgccaccgtc
ctcgacctcaagccgggcgacttcgtcgtccacatcaacttcggcatcggcatcttccgc
gggctggtcaataagacgatcgagggggttgagaaagagtttctctacgtggaataccag
gcgccggacaagctgttcgtccccgccgaccagctcgaccggatccagaaatacctcaac
cccggcgaccaacagccgaagctgaacaagctgaccggaggcgagtggcagcgcacgctt
gggaaggcgaaagaggaggcgaaggcgttcgctcgagacctggttaagctgtacgcccag
cggaaacaggtcatgcgcaagccgtacggaccggatactccgttccaacacgagatggag
tcgaccttcccgtgggtggaaacccgctcccaaatgcaggcgatccgggacgccaagaac
gatatgaacgagccgttcccgatggaccggctcgtatgcggcgacgtcggttttggaaag
accgaggtggcaatacgagccgcgttcaaggcggtgcaggccgggcggcaggtcgccatc
ctttgccccaccaccatcctttcggagcagcattaccggagcttcctcgaccgcctcggg
tcgttcggatcgcagatcgacatcatcaaccggttcacctcgaccgcggagaagaaggaa
atcctcgcccgaattaagtccggcaaggcggaggtcgtcgtggggacgcacgccctcctt
gggcaggggatcgagtttaaggatctggggctcgtcgttatcgacgaggagcagaaattt
ggcgtgaagcagaaggagatgttgaagaacctgcggacccaggtcgacgttctgactctc
tccgcgacgccgatcccgcgtaccctttccatggccctgatggacatccgccagatgtct
ctcatcaacgatccccctcccggccgccttcccgttcgcaccttcgtccgcccctacgcc
ggtgaggtgattcgagaggcgatcctgcgcgagctcgcgcggggtggccaagtcttctac
gtttacaaccgcgtggagtccattcaccacgtcgaagagaagctccgaaaactcgttccc
atggcccgcatcggcgtcggccacgggcagatgcatgagaaggaactggagccgatcatg
gtcggctttatcaagggagagatcgacgttttactttcgacgaccatcgtcgagtcgggc
atcgacataccgaacgccaacaccctaatcgtagagcagtccgatcgcctcggcctggcc
cagttgtaccaacttcgaggccgcgtcggccgatccgaccggcaagcgtacggctatttc
ctctacagcggcgcgctcgacgcgaccattcgggcgggattggtggatgcccagccaaac
gttccccttccagggaaacggaaaaaactgaccgtgaccgagggagcgctccagcgcttg
caggccttgcaagagttcagcaacctcggtgccggatattccctcgccttccgagacctg
caaatccgaggcgccggtgagcttttgggagctaagcaatccggaacgatggtgagcgtg
ggctacgagctatacacgcagcttatcaacgaagcggtggcgatgctgaagaacacggtg
gatgggacgcccgtctcgcccgacgacgaggttcgcgacccgctcgagtccctcaccccg
ctcccggcgttcgaagtgccggtcatcgccctcatccccgaggcatatatcaaagaccag
gcgcagcggctttattactaccagcggatgatgtcgtcgcgcgacgaagcgaccctcggc
gaagttcaagccgaggtcgaagaccggtacggccaccccccgctgcaagtcggccaggcg
ttcgccatcatggggcaacgtctccgagcccgacgccttggattcgagaagctggatgcc
cgccaaggccggatcgcaatcactttcaaggatcgcagcaccgtgcccccaatggtcttc
tcggtgctggcgaagcgcaaccgtgaagcgtacgtgacccgggaacaatacatctggccc
taccaaggagccccgatccccgccatcgaccggatgatggacgagttcgagtccgccctc
cagcacgtggaatcctctcgagcgagtctacggcaatga
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