Allofrancisella guangzhouensis: SD28_04595
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Entry
SD28_04595 CDS
T03527
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
fgu
Allofrancisella guangzhouensis
Pathway
fgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD28_04595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgu03019
]
SD28_04595
03009 Ribosome biogenesis [BR:
fgu03009
]
SD28_04595
Messenger RNA biogenesis [BR:
fgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SD28_04595
Ribosome biogenesis [BR:
fgu03009
]
Prokaryotic type
rRNA helicases
SD28_04595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UTP25
AAA_30
AAA_19
CbiA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJC48961
UniProt:
A0A0A8E9X2
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All DBs
Position
970569..972266
Genome browser
AA seq
565 aa
AA seq
DB search
MNSETKKDFSSLGLDQNIVDTVINLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNLDLNDKSRSPQILVLAPTRELAIQVAEQFEAFAKSVTSLSVACIYGGQEYGS
QIRALKNGVQVVVGTTGRVMDHIEKGTLKLDNLRALVLDEADEMLRMGFIDDVRWVLSHI
SDDCQRLLFSATIPEDIADIIKEYLRNPCKIQVKAKTKTANTITQKFIVVKGFRKIDALD
RLLEIEETDGVVIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVEQFKSARSN
ILVATDVVARGIDLERISHVINYDMPNDEDTYVHRIGRTGRAGREGVSISLVTLKEMRFL
RSLERFTNSKLEEVFMPSAKELADSRINDFKNRITSALEKNKSLDKYKEIIIEIRDQLEL
DSEDLLAVLTLLAQDKKGFFPREIQAKEEKRAPVKRDERTSRPSDRFNDRDRNNNSRFDK
KRPKRVDIDLTTYRIDVGRENDVQPRNIVGAIANEGGIDSKHICNISIEKDYTLVDLPAN
LSAKVINHLKKVWVAGKKLNLTEHR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagaaacaaaaaaagattttagctctttaggcttagatcaaaatattgtagat
actgttataaatttagggtatgagaacccaacgccaattcaacagtatgctattccatat
atattatcgggtagagatgtgctaggtcaagcacaaacaggtacgggtaaaacagcagct
tttgcattaccattaattaataatttagatctgaatgataaaagcagatctccacagatc
ttagtattggcgccaactcgagaattagctatacaagtagcggaacaatttgaagctttt
gcaaaaagtgtcacaagtttatctgttgcttgtatctatggtggacaagaatatggttca
caaataagagcacttaaaaatggtgtccaagtagtagtaggtactactggtagagttatg
gaccatattgaaaaaggaacactaaagctagataatctaagagcgttagtattagatgaa
gcagatgaaatgcttagaatgggttttattgacgatgttagatgggttttaagtcacata
tctgatgattgccagagactacttttttcagcaactataccggaagatatagctgatatt
ataaaagagtatttaagaaatccatgtaaaatacaggttaaagcaaaaaccaaaacagct
aatacaattacacaaaaatttatagtagttaaaggttttagaaaaatagatgctttagac
agactattagaaatagaagaaactgatggtgtagtaatatttgttaaaactaagacaagt
acaatagaagtagcagataatttaaaagctcttggttataaagtagctgctataaatggt
gatatgcagcaatctcaaagagaatatattgttgagcaatttaaaagtgctagatctaac
attttagttgctactgatgttgtagctagaggtatagaccttgagcgtattagtcatgtg
attaactatgatatgccaaatgatgaagacacttatgttcacagaattggccgtactggt
agagcagggcgtgaaggagtttctatttctctagtaacattaaaagaaatgagattttta
cgttcgcttgagcgatttactaattcaaaactagaagaagtatttatgccaagtgctaaa
gaacttgctgatagtaggattaatgactttaaaaatagaataacctctgctctagaaaaa
aataaatctctagacaagtataaagaaataataattgaaatacgtgatcagttagagctg
gattcagaagatttattagcagtacttacacttttagcacaagataagaaaggctttttt
ccaagggaaattcaggctaaagaagaaaagagagctcctgttaaaagagatgaaaggaca
tccagacctagtgatagatttaatgatagagacagaaataataattctaggtttgacaaa
aaacgaccaaagagagtagatatagatctaactacctatagaatagatgtgggtcgtgaa
aatgatgtacaaccaagaaatatagttggtgctatagcaaatgaaggtggcatagatagt
aaacatatctgtaatatatctatagaaaaagactatactctagttgatttaccagctaat
ttgagtgcaaaagttataaatcatcttaaaaaagtttgggtagcaggtaaaaaattaaat
cttactgagcataggtaa
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