Fischerella sp. NIES-3754: FIS3754_21870
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Entry
FIS3754_21870 CDS
T04195
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fis
Fischerella sp. NIES-3754
Pathway
fis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIS3754_21870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fis03019
]
FIS3754_21870
03009 Ribosome biogenesis [BR:
fis03009
]
FIS3754_21870
Enzymes [BR:
fis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIS3754_21870
Messenger RNA biogenesis [BR:
fis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIS3754_21870
Ribosome biogenesis [BR:
fis03009
]
Prokaryotic type
rRNA helicases
FIS3754_21870
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
UvrD-helicase
AAA_19
UTP25
Motif
Other DBs
NCBI-ProteinID:
BAU06274
UniProt:
A0A0S3TMI1
LinkDB
All DBs
Position
complement(2507815..2509365)
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AA seq
516 aa
AA seq
DB search
MTLSFQELGISPERVEQIEKIGFTTPTNIQAQAIPQLLAGRDVVGQSQTGTGKTAAFSLP
ILERLDVSQKAVQALVLTPTRELAIQVQDAISEFLGNEGLRVMAIYGGQSIDRQILQLKR
GVHMVVGTPGRVIDLLERGSLKLDHVKWFVLDEADEMLSMGFIDDVEKILSQAPQQRQTA
LFSATMPPSIRQLVNKFLNDPVTVAVEQPKAAPNKINQVAYLVPRHWSKVKALQPILEME
DPESALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATD
IAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQLFERH
VRQSWQLLSIPTRAQIEARQLEKLQTQVQEALVGERMASFLSIVSQLSEQYDAHAIAAAA
LQIAYDQTRPAWLLSEADYPEEDLRPTPKPKLRGGGRRDSNRESSGEHRRRSSWVSSEAG
AEGDKRSSSKPKLRTGRRDTPVPKKVSSHPARESAS
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgacactttcttttcaagaactaggtatctcaccagaacgggttgagcaaattgaaaaa
attggttttaccacaccaaccaacattcaagcccaagcgattccccaacttttagcgggt
cgcgatgttgttggtcaatctcaaacaggtacaggtaaaaccgctgctttctctctgcca
attctagagcggctggatgtaagtcaaaaagcagtgcaagcactggttttgaccccaact
cgagagttagcaattcaagttcaagatgctatcagtgagtttctgggtaacgaaggcttg
cgtgtcatggcaatttacggcggtcaatctattgatcgccaaattttacaactcaagcgc
ggtgttcacatggtcgtgggtacaccagggcgagtcatagacttgctagaacggggtagc
ctgaagctggatcatgtgaaatggtttgttttagatgaagccgacgaaatgctcagcatg
ggctttatcgatgacgtggaaaaaattctttcccaagcaccccaacaacggcagacagct
ttattctccgccacaatgccgccatccatccgccagctggtgaataagttcctgaatgat
ccagtaacagtcgccgttgaacaaccaaaagctgctcccaacaaaattaatcaggtagct
tatctcgtaccacgccattggtcaaaagtcaaagctttacagcccatcctggaaatggaa
gatccagaatcggctttgatctttgttcgcactagacgcacggctgctgaactcaccaat
caattgcaagctgcgggtcacagtgttgatgaataccacggtgatttatcccaacaagca
cgggaacgtttgttgactcgattccgtaatcgtcaagtgcgctgggtagtagctacggat
attgcagcccggggcttggatgttgaccaactatcccacgtaatcaactttgatttacca
gacagtgtggaaacctatgtccaccgcatcggtcgtactggtcgcgctggtaaagaaggt
acagccatcaccttggtgcagccctttgaacgacgcaagcagcagttgtttgagcgccat
gtacgtcaaagttggcaattactctcgattcccacacgggcgcaaattgaagctaggcaa
ttggaaaaattacaaacccaggtgcaagaagctttggtgggtgaacgcatggcttcattt
ttgtccatcgttagtcagctgagcgaacaatatgatgctcatgcgatcgccgcagctgca
ttacaaatcgcctacgaccaaacccgtcctgcttggttgctatcagaagccgactatccc
gaagaagacctccgacccactcccaaacccaaactacgtggtggcggtcgccgtgactct
aatcgcgagtctagtggtgaacaccgtcgccgttcctcttgggtgtcatcagaagcaggt
gcagaaggagacaaacgcagctcctccaagcccaaactgcgcacaggacgacgggatact
ccggtgccgaaaaaagtaagttctcatccagctagagagtccgcttcctag
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